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Answer: Answer: Problem extracting differentially expressed genes using diffxpy
3.9 years ago by Marco Pannone ▴ 810
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2.8k
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Comment: Comment: How to get/calculate coverage of a gene using bed file?
3.9 years ago by Marco Pannone ▴ 810
2
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1
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941
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Sorting .bed file by genes size
sorting chip-seq
updated 3.9 years ago by ★ 1.9k • written 3.9 years ago by ▴ 810
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2.1k
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Comment: Comment: Heatmap for ChIP-seq data
3.9 years ago by Marco Pannone ▴ 810
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2
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2.1k
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Heatmap for ChIP-seq data
heatmap chip-seq
updated 3.9 years ago by ★ 3.1k • written 3.9 years ago by ▴ 810
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3.0k
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Comment: Comment: featureCounts low annotation rate RNA-seq
3.9 years ago by Marco Pannone ▴ 810
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1
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3.0k
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Comment: Comment: featureCounts low annotation rate RNA-seq
3.9 years ago by Marco Pannone ▴ 810
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3.0k
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Comment: Comment: featureCounts low annotation rate RNA-seq
3.9 years ago by Marco Pannone ▴ 810
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3.0k
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featureCounts low annotation rate RNA-seq
annotation rna-seq featureCounts
3.9 years ago by Marco Pannone ▴ 810
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3.0k
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Comment: Comment: featureCounts low annotation rate RNA-seq
3.9 years ago by Marco Pannone ▴ 810
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2
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2.2k
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Understanding PCA plot from DiffBind
diffbind pca chip-seq
updated 4.4 years ago by ★ 2.1k • written 4.4 years ago by ▴ 810
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3.6k
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Comment: C: Removing chrEBV reads from bam file
4.6 years ago by Marco Pannone ▴ 810
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3.6k
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Comment: C: Removing chrEBV reads from bam file
4.6 years ago by Marco Pannone ▴ 810
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1
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3.6k
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Comment: C: Removing chrEBV reads from bam file
4.6 years ago by Marco Pannone ▴ 810
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10
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3.6k
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Removing chrEBV reads from bam file
bam genome
updated 2.5 years ago by 45k • written 4.6 years ago by ▴ 810
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1
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3.6k
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Comment: C: Removing chrEBV from bam file
4.6 years ago by Marco Pannone ▴ 810
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911
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Comment: C: Bowtie: "Floating point exception: 8"
4.6 years ago by Marco Pannone ▴ 810
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2
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911
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Bowtie: "Floating point exception: 8"
bowtie alignment ChIP-Seq
updated 4.6 years ago by 15k • written 4.6 years ago by ▴ 810
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1.5k
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Comment: C: plotCorrelation scatter plot ChIP-seq data
4.6 years ago by Marco Pannone ▴ 810
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2
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1.5k
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plotCorrelation scatter plot ChIP-seq data
ChIP-Seq deepTools correlation
4.6 years ago by Marco Pannone ▴ 810
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7.2k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
4.6 years ago by Marco Pannone ▴ 810
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7.2k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
4.6 years ago by Marco Pannone ▴ 810
14
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10
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7.2k
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bamCoverage bin size for narrow and broad histone marks
ChIP-Seq deeptools
4.6 years ago by Marco Pannone ▴ 810
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1
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7.2k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
4.6 years ago by Marco Pannone ▴ 810
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7.2k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
4.6 years ago by Marco Pannone ▴ 810
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0
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1.2k
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Correlation heatmap for ChIP-seq data: Pearson or Spearman?
ChIP-Seq correlation deeptools
4.6 years ago by Marco Pannone ▴ 810
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0
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2.3k
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Comment: C: hisat2 alignment error
4.8 years ago by Marco Pannone ▴ 810
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1
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2.3k
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Comment: C: hisat2 alignment error
4.8 years ago by Marco Pannone ▴ 810
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5
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2.3k
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hisat2 alignment error
hisat2 RNA-Seq alignment software error
4.8 years ago by Marco Pannone ▴ 810
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0
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968
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Filter out transcription factors from a list of genes
transcription factors RNA-Seq
5.3 years ago by Marco Pannone ▴ 810
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1.8k
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Comment: C: Pathways Network Analysis Cytoscape
5.3 years ago by Marco Pannone ▴ 810
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2
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1.8k
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Pathways Network Analysis Cytoscape
network RNA-Seq pathways cytoscape
updated 5.3 years ago by ▴ 650 • written 5.3 years ago by ▴ 810
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4
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5.3k
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GSEA analysis error
gsea RNA-Seq
updated 5.3 years ago by ▴ 10 • written 5.3 years ago by ▴ 810
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0
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5.3k
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Comment: C: GSEA analysis error
5.3 years ago by Marco Pannone ▴ 810
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0
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3.6k
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Comment: C: SICER for ChIP-seq broad peaks
5.4 years ago by Marco Pannone ▴ 810
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2
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3.6k
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SICER for ChIP-seq broad peaks
ChIP-Seq sicer
5.4 years ago by Marco Pannone ▴ 810
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0
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12k
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Comment: C: Samtools problem with running (Conda)
5.4 years ago by Marco Pannone ▴ 810
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0
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1.8k
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Comment: C: GSEA analysis RNA-seq data
5.5 years ago by Marco Pannone ▴ 810
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1
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1.8k
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Comment: C: GSEA analysis RNA-seq data
5.5 years ago by Marco Pannone ▴ 810
4
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4
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1.8k
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GSEA analysis RNA-seq data
RNA-Seq gsea pathway gene ontology
updated 5.5 years ago by 154k • written 5.5 years ago by ▴ 810
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0
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5.5k
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Comment: C: bamCompare output values ChIP/input normalization
5.6 years ago by Marco Pannone ▴ 810
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1
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5.5k
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Comment: C: bamCompare output values ChIP/input normalization
5.6 years ago by Marco Pannone ▴ 810
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1
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5.5k
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Comment: C: bamCompare output values ChIP/input normalization
5.6 years ago by Marco Pannone ▴ 810
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6
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5.5k
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bamCompare output values ChIP/input normalization
ChIP-Seq deeptools bamcompare normalization
updated 5.6 years ago by ★ 1.1k • written 5.6 years ago by ▴ 810
194 results • Page 4 of 4
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