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0
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1
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1.4k
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Answer:
Answer: Problem extracting differentially expressed genes using diffxpy
2.5 years ago by
Marco Pannone
▴ 790
1
vote
1
reply
2.0k
views
Comment:
Comment: How to get/calculate coverage of a gene using bed file?
2.5 years ago by
Marco Pannone
▴ 790
2
votes
1
reply
632
views
Sorting .bed file by genes size
sorting
chip-seq
updated 2.5 years ago by
kashiff007
★ 1.9k • written 2.5 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.3k
views
Comment:
Comment: Heatmap for ChIP-seq data
2.5 years ago by
Marco Pannone
▴ 790
2
votes
2
replies
1.3k
views
Heatmap for ChIP-seq data
heatmap
chip-seq
updated 2.5 years ago by
Papyrus
★ 2.9k • written 2.5 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.8k
views
Comment:
Comment: featureCounts low annotation rate RNA-seq
2.5 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.8k
views
Comment:
Comment: featureCounts low annotation rate RNA-seq
2.5 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.8k
views
Comment:
Comment: featureCounts low annotation rate RNA-seq
2.5 years ago by
Marco Pannone
▴ 790
0
votes
7
replies
1.8k
views
featureCounts low annotation rate RNA-seq
annotation
rna-seq
featureCounts
2.5 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.8k
views
Comment:
Comment: featureCounts low annotation rate RNA-seq
2.5 years ago by
Marco Pannone
▴ 790
2
votes
2
replies
1.5k
views
Understanding PCA plot from DiffBind
diffbind
pca
chip-seq
updated 3.0 years ago by
Rory Stark
★ 2.0k • written 3.0 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
2.4k
views
Comment:
C: Removing chrEBV reads from bam file
3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
2.4k
views
Comment:
C: Removing chrEBV reads from bam file
3.2 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
2.4k
views
Comment:
C: Removing chrEBV reads from bam file
3.2 years ago by
Marco Pannone
▴ 790
6
votes
10
replies
2.4k
views
Removing chrEBV reads from bam file
bam
genome
updated 14 months ago by
Ram
43k • written 3.2 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
2.4k
views
Comment:
C: Removing chrEBV from bam file
3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
626
views
Comment:
C: Bowtie: "Floating point exception: 8"
3.2 years ago by
Marco Pannone
▴ 790
0
votes
2
replies
626
views
Bowtie: "Floating point exception: 8"
bowtie
alignment
ChIP-Seq
updated 3.2 years ago by
swbarnes2
14k • written 3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.2k
views
Comment:
C: plotCorrelation scatter plot ChIP-seq data
3.2 years ago by
Marco Pannone
▴ 790
0
votes
2
replies
1.2k
views
plotCorrelation scatter plot ChIP-seq data
ChIP-Seq
deepTools
correlation
3.2 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
4.4k
views
Comment:
C: bamCoverage bin size for narrow and broad histone marks
3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
4.4k
views
Comment:
C: bamCoverage bin size for narrow and broad histone marks
3.2 years ago by
Marco Pannone
▴ 790
14
votes
10
replies
4.4k
views
bamCoverage bin size for narrow and broad histone marks
ChIP-Seq
deeptools
3.2 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
4.4k
views
Comment:
C: bamCoverage bin size for narrow and broad histone marks
3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
4.4k
views
Comment:
C: bamCoverage bin size for narrow and broad histone marks
3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
870
views
Correlation heatmap for ChIP-seq data: Pearson or Spearman?
ChIP-Seq
correlation
deeptools
3.2 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.6k
views
Comment:
C: hisat2 alignment error
3.4 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.6k
views
Comment:
C: hisat2 alignment error
3.4 years ago by
Marco Pannone
▴ 790
3
votes
5
replies
1.6k
views
hisat2 alignment error
hisat2
RNA-Seq
alignment
software error
3.4 years ago by
Marco Pannone
▴ 790
1
vote
0
replies
784
views
Filter out transcription factors from a list of genes
transcription factors
RNA-Seq
3.9 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.1k
views
Comment:
C: Pathways Network Analysis Cytoscape
3.9 years ago by
Marco Pannone
▴ 790
1
vote
2
replies
1.1k
views
Pathways Network Analysis Cytoscape
network
RNA-Seq
pathways
cytoscape
updated 3.9 years ago by
scooter
▴ 620 • written 3.9 years ago by
Marco Pannone
▴ 790
0
votes
4
replies
3.5k
views
GSEA analysis error
gsea
RNA-Seq
updated 3.9 years ago by
Danielle B
▴ 10 • written 3.9 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
3.5k
views
Comment:
C: GSEA analysis error
3.9 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
2.7k
views
Comment:
C: SICER for ChIP-seq broad peaks
4.0 years ago by
Marco Pannone
▴ 790
1
vote
2
replies
2.7k
views
SICER for ChIP-seq broad peaks
ChIP-Seq
sicer
4.0 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
11k
views
Comment:
C: Samtools problem with running (Conda)
4.1 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
1.3k
views
Comment:
C: GSEA analysis RNA-seq data
4.1 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.3k
views
Comment:
C: GSEA analysis RNA-seq data
4.1 years ago by
Marco Pannone
▴ 790
4
votes
4
replies
1.3k
views
GSEA analysis RNA-seq data
RNA-Seq
gsea
pathway
gene ontology
updated 4.1 years ago by
GenoMax
142k • written 4.1 years ago by
Marco Pannone
▴ 790
0
votes
0
replies
3.9k
views
Comment:
C: bamCompare output values ChIP/input normalization
4.2 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
3.9k
views
Comment:
C: bamCompare output values ChIP/input normalization
4.2 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
3.9k
views
Comment:
C: bamCompare output values ChIP/input normalization
4.2 years ago by
Marco Pannone
▴ 790
4
votes
6
replies
3.9k
views
bamCompare output values ChIP/input normalization
ChIP-Seq
deeptools
bamcompare
normalization
updated 4.2 years ago by
colin.kern
★ 1.1k • written 4.2 years ago by
Marco Pannone
▴ 790
194 results • Page
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