Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
487
views
Comment: Comment: Normalizing Peaks in ChIP seq
3 months ago by mropri ▴ 160
0
votes
3
replies
487
views
Normalizing Peaks in ChIP seq
ChIP-seq
updated 3 months ago by 45k • written 3 months ago by ▴ 160
1
vote
0
replies
347
views
Calculating if cell proportions are significant using propeller
regression proportions scRNA-seq
9 months ago by mropri ▴ 160
0
votes
0
replies
962
views
Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
10 months ago by mropri ▴ 160
0
votes
0
replies
1.6k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
11 months ago by mropri ▴ 160
0
votes
1
reply
1.6k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
11 months ago by mropri ▴ 160
0
votes
0
replies
1.6k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
11 months ago by mropri ▴ 160
0
votes
1
reply
1.6k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
11 months ago by mropri ▴ 160
1
vote
7
replies
1.6k
views
Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
DESeq2 scRNAseq Pseudobulk
11 months ago by mropri ▴ 160
0
votes
0
replies
1.5k
views
Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
11 months ago by mropri ▴ 160
0
votes
1
reply
1.5k
views
Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
11 months ago by mropri ▴ 160
3
votes
5
replies
1.5k
views
How to account for total number of cells when aggregating for pseudobulk?
Pseudobulk
updated 11 months ago by 88k • written 11 months ago by ▴ 160
0
votes
0
replies
1.3k
views
Comment: Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
11 months ago by mropri ▴ 160
2
votes
2
replies
1.3k
views
Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checke…
DESeq2
11 months ago by mropri ▴ 160
0
votes
0
replies
1.1k
views
Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
13 months ago by mropri ▴ 160
0
votes
3
replies
1.1k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
13 months ago by mropri ▴ 160
0
votes
0
replies
1.1k
views
Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
updated 13 months ago by 152k • written 13 months ago by ▴ 160
0
votes
0
replies
931
views
Comment: Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
13 months ago by mropri ▴ 160
0
votes
2
replies
931
views
Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
13 months ago by mropri ▴ 160
0
votes
1
reply
962
views
Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
14 months ago by mropri ▴ 160
0
votes
4
replies
962
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
10 months ago by mropri ▴ 160
0
votes
2
replies
2.8k
views
ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 16 months ago by 45k • written 5.0 years ago by ▴ 160
0
votes
1
reply
1.9k
views
Comment: Comment: Is it necessary to integrate again samples when subclustering
17 months ago by mropri ▴ 160
0
votes
3
replies
1.9k
views
Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 12 weeks ago by • 0 • written 17 months ago by ▴ 160
0
votes
0
replies
1.6k
views
Comment: Comment: Single Cell RNA-seq analysis one by one vs all together
17 months ago by mropri ▴ 160
0
votes
0
replies
362
views
Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 17 months ago by 45k • written 17 months ago by ▴ 160
0
votes
2
replies
1.6k
views
Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
17 months ago by mropri ▴ 160
0
votes
0
replies
434
views
Check if BAMboozle anonymized bam files
BAMboozle
23 months ago by mropri ▴ 160
0
votes
0
replies
1.7k
views
Comment: Comment: BAMboozle
2.1 years ago by mropri ▴ 160
0
votes
0
replies
1.3k
views
Comment: Comment: Picard ribosome intervals list
2.1 years ago by mropri ▴ 160
0
votes
1
reply
1.7k
views
Comment: Comment: BAMboozle
2.1 years ago by mropri ▴ 160
0
votes
0
replies
1.7k
views
Comment: Comment: BAMboozle
2.1 years ago by mropri ▴ 160
0
votes
2
replies
1.7k
views
Comment: Comment: BAMboozle
updated 2.1 years ago by 102k • written 2.1 years ago by ▴ 160
0
votes
8
replies
1.7k
views
BAMboozle
BAMboozle
2.1 years ago by mropri ▴ 160
0
votes
1
reply
1.3k
views
Comment: Comment: Picard ribosome intervals list
updated 2.1 years ago by 152k • written 2.1 years ago by ▴ 160
0
votes
3
replies
1.3k
views
Picard ribosome intervals list
Picard
2.1 years ago by mropri ▴ 160
0
votes
1
reply
2.2k
views
Cannot install limma
bioconductor limma
updated 2.2 years ago by ▴ 620 • written 2.2 years ago by ▴ 160
0
votes
0
replies
1.9k
views
Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
2.2 years ago by mropri ▴ 160
0
votes
0
replies
1.9k
views
Comment: Comment: I am trying to get an older version of SVA (Surrogate Variable Analysis) in R us
2.2 years ago by mropri ▴ 160
2
votes
6
replies
1.9k
views
Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
2.2 years ago by mropri ▴ 160
1
vote
0
replies
827
views
Comment: Comment: Power analysis for patient samples
2.2 years ago by mropri ▴ 160
3
votes
2
replies
827
views
Power analysis for patient samples
RNA-seq
2.2 years ago by mropri ▴ 160
0
votes
0
replies
2.1k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.3 years ago by mropri ▴ 160
0
votes
0
replies
2.1k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.3 years ago by mropri ▴ 160
6
votes
6
replies
2.1k
views
Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
2.3 years ago by mropri ▴ 160
0
votes
1
reply
2.1k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.3 years ago by mropri ▴ 160
0
votes
0
replies
1.3k
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.7 years ago by mropri ▴ 160
0
votes
0
replies
1.3k
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.7 years ago by mropri ▴ 160
0
votes
2
replies
1.3k
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.7 years ago by mropri ▴ 160
0
votes
6
replies
1.3k
views
GO analysis where I can set by own set of genes to search against
Analysis GO
2.7 years ago by mropri ▴ 160
143 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6