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Comment: Comment: Normalizing Peaks in ChIP seq
22 days ago by mropri ▴ 160
0
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3
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280
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Normalizing Peaks in ChIP seq
ChIP-seq
updated 22 days ago by 45k • written 23 days ago by ▴ 160
1
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0
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281
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Calculating if cell proportions are significant using propeller
regression proportions scRNA-seq
6 months ago by mropri ▴ 160
0
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0
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825
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
7 months ago by mropri ▴ 160
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0
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1.2k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
8 months ago by mropri ▴ 160
0
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1
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1.2k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
8 months ago by mropri ▴ 160
0
votes
0
replies
1.2k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
8 months ago by mropri ▴ 160
0
votes
1
reply
1.2k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
8 months ago by mropri ▴ 160
1
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7
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1.2k
views
Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
DESeq2 scRNAseq Pseudobulk
8 months ago by mropri ▴ 160
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0
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1.1k
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
8 months ago by mropri ▴ 160
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1
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1.1k
views
Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
8 months ago by mropri ▴ 160
3
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5
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1.1k
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How to account for total number of cells when aggregating for pseudobulk?
Pseudobulk
updated 8 months ago by 87k • written 8 months ago by ▴ 160
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0
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1.1k
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Comment: Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
8 months ago by mropri ▴ 160
2
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2
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1.1k
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Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checke…
DESeq2
8 months ago by mropri ▴ 160
0
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0
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910
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Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
10 months ago by mropri ▴ 160
0
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3
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910
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Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
10 months ago by mropri ▴ 160
0
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0
replies
910
views
Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
updated 10 months ago by 150k • written 10 months ago by ▴ 160
0
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0
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731
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Comment: Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
11 months ago by mropri ▴ 160
0
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2
replies
731
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Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
11 months ago by mropri ▴ 160
0
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1
reply
825
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
11 months ago by mropri ▴ 160
0
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4
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825
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
7 months ago by mropri ▴ 160
0
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2
replies
2.7k
views
ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 13 months ago by 45k • written 4.7 years ago by ▴ 160
0
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1
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1.5k
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Comment: Comment: Is it necessary to integrate again samples when subclustering
14 months ago by mropri ▴ 160
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3
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1.5k
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Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 20 hours ago by • 0 • written 14 months ago by ▴ 160
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0
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1.3k
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Comment: Comment: Single Cell RNA-seq analysis one by one vs all together
14 months ago by mropri ▴ 160
0
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0
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322
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Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 14 months ago by 45k • written 14 months ago by ▴ 160
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2
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1.3k
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Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
14 months ago by mropri ▴ 160
0
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0
replies
406
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Check if BAMboozle anonymized bam files
BAMboozle
20 months ago by mropri ▴ 160
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0
replies
1.4k
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Comment: Comment: BAMboozle
22 months ago by mropri ▴ 160
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0
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1.2k
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Comment: Comment: Picard ribosome intervals list
22 months ago by mropri ▴ 160
0
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1
reply
1.4k
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Comment: Comment: BAMboozle
22 months ago by mropri ▴ 160
0
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0
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1.4k
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Comment: Comment: BAMboozle
22 months ago by mropri ▴ 160
0
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2
replies
1.4k
views
Comment: Comment: BAMboozle
updated 22 months ago by 102k • written 22 months ago by ▴ 160
0
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8
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1.4k
views
BAMboozle
BAMboozle
22 months ago by mropri ▴ 160
0
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1
reply
1.2k
views
Comment: Comment: Picard ribosome intervals list
updated 22 months ago by 150k • written 22 months ago by ▴ 160
0
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3
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1.2k
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Picard ribosome intervals list
Picard
22 months ago by mropri ▴ 160
0
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1
reply
2.0k
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Cannot install limma
bioconductor limma
updated 23 months ago by ▴ 620 • written 23 months ago by ▴ 160
0
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0
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1.7k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
23 months ago by mropri ▴ 160
0
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0
replies
1.7k
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Comment: Comment: I am trying to get an older version of SVA (Surrogate Variable Analysis) in R us
23 months ago by mropri ▴ 160
2
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6
replies
1.7k
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Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
23 months ago by mropri ▴ 160
1
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0
replies
738
views
Comment: Comment: Power analysis for patient samples
2.0 years ago by mropri ▴ 160
3
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2
replies
738
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Power analysis for patient samples
RNA-seq
2.0 years ago by mropri ▴ 160
0
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0
replies
1.8k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.1 years ago by mropri ▴ 160
0
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0
replies
1.8k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.1 years ago by mropri ▴ 160
6
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6
replies
1.8k
views
Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
2.1 years ago by mropri ▴ 160
0
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1
reply
1.8k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.1 years ago by mropri ▴ 160
0
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0
replies
1.2k
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Comment: Comment: GO analysis where I can set by own set of genes to search against
2.4 years ago by mropri ▴ 160
0
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0
replies
1.2k
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Comment: Comment: GO analysis where I can set by own set of genes to search against
2.4 years ago by mropri ▴ 160
0
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2
replies
1.2k
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.4 years ago by mropri ▴ 160
0
votes
6
replies
1.2k
views
GO analysis where I can set by own set of genes to search against
Analysis GO
2.4 years ago by mropri ▴ 160
143 results • Page 1 of 3
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