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525
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
5 weeks ago by mropri ▴ 150
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0
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720
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
9 weeks ago by mropri ▴ 150
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1
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720
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
9 weeks ago by mropri ▴ 150
0
votes
0
replies
720
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
9 weeks ago by mropri ▴ 150
0
votes
1
reply
720
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
10 weeks ago by mropri ▴ 150
1
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7
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720
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Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
DESeq2 scRNAseq Pseudobulk
9 weeks ago by mropri ▴ 150
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0
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476
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
10 weeks ago by mropri ▴ 150
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1
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476
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
10 weeks ago by mropri ▴ 150
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5
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476
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How to account for total number of cells when aggregating for pseudobulk?
Pseudobulk
updated 10 weeks ago by 84k • written 10 weeks ago by ▴ 150
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0
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778
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Comment: Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
11 weeks ago by mropri ▴ 150
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2
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778
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Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checke…
DESeq2
11 weeks ago by mropri ▴ 150
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0
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547
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Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
4 months ago by mropri ▴ 150
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3
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547
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Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
4 months ago by mropri ▴ 150
0
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0
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547
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Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
updated 4 months ago by 145k • written 4 months ago by ▴ 150
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423
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Comment: Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
4 months ago by mropri ▴ 150
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2
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423
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Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
4 months ago by mropri ▴ 150
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1
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525
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
5 months ago by mropri ▴ 150
0
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4
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525
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Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
5 weeks ago by mropri ▴ 150
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2
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2.4k
views
ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 6 months ago by 44k • written 4.2 years ago by ▴ 150
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0
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964
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Comment: Comment: Is it necessary to integrate again samples when subclustering
8 months ago by mropri ▴ 150
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2
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964
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Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 8 months ago by 44k • written 8 months ago by ▴ 150
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899
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Comment: Comment: Single Cell RNA-seq analysis one by one vs all together
8 months ago by mropri ▴ 150
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0
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255
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Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 8 months ago by 44k • written 8 months ago by ▴ 150
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2
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899
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Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
8 months ago by mropri ▴ 150
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0
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320
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Check if BAMboozle anonymized bam files
BAMboozle
14 months ago by mropri ▴ 150
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0
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1.1k
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Comment: Comment: BAMboozle
16 months ago by mropri ▴ 150
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0
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949
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Comment: Comment: Picard ribosome intervals list
16 months ago by mropri ▴ 150
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1
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1.1k
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Comment: Comment: BAMboozle
16 months ago by mropri ▴ 150
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0
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1.1k
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Comment: Comment: BAMboozle
16 months ago by mropri ▴ 150
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2
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1.1k
views
Comment: Comment: BAMboozle
updated 16 months ago by 101k • written 16 months ago by ▴ 150
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8
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1.1k
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BAMboozle
BAMboozle
16 months ago by mropri ▴ 150
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1
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949
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Comment: Comment: Picard ribosome intervals list
updated 16 months ago by 145k • written 16 months ago by ▴ 150
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3
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949
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Picard ribosome intervals list
Picard
16 months ago by mropri ▴ 150
0
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1
reply
1.5k
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Cannot install limma
bioconductor limma
updated 17 months ago by ▴ 610 • written 17 months ago by ▴ 150
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0
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1.4k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
17 months ago by mropri ▴ 150
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0
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1.4k
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Comment: Comment: I am trying to get an older version of SVA (Surrogate Variable Analysis) in R us
17 months ago by mropri ▴ 150
2
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6
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1.4k
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Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
17 months ago by mropri ▴ 150
1
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0
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582
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Comment: Comment: Power analysis for patient samples
18 months ago by mropri ▴ 150
3
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2
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582
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Power analysis for patient samples
RNA-seq
18 months ago by mropri ▴ 150
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0
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1.4k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
19 months ago by mropri ▴ 150
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0
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1.4k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
19 months ago by mropri ▴ 150
6
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6
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1.4k
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Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
19 months ago by mropri ▴ 150
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1
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1.4k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
19 months ago by mropri ▴ 150
0
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0
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914
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Comment: Comment: GO analysis where I can set by own set of genes to search against
23 months ago by mropri ▴ 150
0
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0
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914
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Comment: Comment: GO analysis where I can set by own set of genes to search against
23 months ago by mropri ▴ 150
0
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2
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914
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Comment: Comment: GO analysis where I can set by own set of genes to search against
23 months ago by mropri ▴ 150
0
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6
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914
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GO analysis where I can set by own set of genes to search against
Analysis GO
23 months ago by mropri ▴ 150
2
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5
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1.4k
views
Sabre demultiplexer
demultiplexing Sabre RNA-seq
updated 24 months ago by 145k • written 2.3 years ago by ▴ 150
0
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0
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475
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Corr.test method
Correlation corr.test r
2.1 years ago by mropri ▴ 150
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0
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2.7k
views
Comment: Comment: Creating a script to run STAR alignment on multiple fastq files
2.3 years ago by mropri ▴ 150
140 results • Page 1 of 3
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