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Comment: Comment: Scanpy Dotplot / Matplotlib Help
3 months ago by cthangav ▴ 110
0
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2
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1.1k
views
Scanpy Dotplot / Matplotlib Help
Matplotlib Dotplot Python Scanpy
3 months ago by cthangav ▴ 110
0
votes
3
replies
1.1k
views
Getting an Expression Matrix from GDC Manifest File
RNAseq
updated 11 months ago by ★ 1.3k • written 11 months ago by ▴ 110
0
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1
reply
1.1k
views
Comment: Comment: Getting an Expression Matrix from GDC Manifest File
11 months ago by cthangav ▴ 110
0
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0
replies
987
views
Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
11 months ago by cthangav ▴ 110
0
votes
1
reply
987
views
Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
12 months ago by cthangav ▴ 110
2
votes
4
replies
987
views
NCI Genomic Data Commons gdc-rnaseq-tool
RNA-seq Genomic-Data-Commons
11 months ago by cthangav ▴ 110
2
votes
1
reply
556
views
Conda Environment Issue
conda python yaml environments dependencies
updated 12 months ago by ▴ 30 • written 12 months ago by ▴ 110
0
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1
reply
4.4k
views
Comment: Comment: Create Conda Environment with YAML File
20 months ago by cthangav ▴ 110
1
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2
replies
4.4k
views
Comment: Comment: Create Conda Environment with YAML File
20 months ago by cthangav ▴ 110
7
votes
8
replies
4.4k
views
Create Conda Environment with YAML File
Python
updated 20 months ago by ★ 3.1k • written 20 months ago by ▴ 110
0
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0
replies
4.3k
views
Comment: Comment: How to overlay tracks in IGV?
2.2 years ago by cthangav ▴ 110
0
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0
replies
11k
views
Comment: Comment: Get TPM from RNA counts and gene length?
2.2 years ago by cthangav ▴ 110
0
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1
reply
4.3k
views
Comment: Comment: How to overlay tracks in IGV?
2.2 years ago by cthangav ▴ 110
2
votes
8
replies
4.3k
views
How to overlay tracks in IGV?
R IGV
2.2 years ago by cthangav ▴ 110
0
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1
reply
4.3k
views
Comment: Comment: How to overlay tracks in IGV?
2.3 years ago by cthangav ▴ 110
0
votes
1
reply
4.3k
views
Comment: Comment: How to overlay tracks in IGV?
2.3 years ago by cthangav ▴ 110
0
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0
replies
606
views
How to make Cicero Spider Plot
R Cicero IGV
2.3 years ago by cthangav ▴ 110
20
votes
4
replies
13k
views
Convert Human to Mouse Symbols
biomart R gene-symbols
updated 2.4 years ago by ★ 1.8k • written 2.4 years ago by ▴ 110
0
votes
0
replies
13k
views
Comment: Comment: Convert Human to Mouse Symbols
2.4 years ago by cthangav ▴ 110
0
votes
1
reply
1.4k
views
Putting Multiple ANOVA P-Values on Violin Plot
violin R ANOVA
updated 2.4 years ago by 10k • written 2.4 years ago by ▴ 110
0
votes
1
reply
961
views
Heatmap / Gene List Similarity
R
updated 2.4 years ago by ▴ 260 • written 2.4 years ago by ▴ 110
2
votes
1
reply
1.0k
views
Filtering content in heatmap to highest values
R heatmap ggplot2
2.4 years ago by cthangav ▴ 110
5
votes
2
replies
1.1k
views
Graphing Average Expression of Group of Genes
Boxplot R
updated 2.4 years ago by ★ 1.6k • written 2.4 years ago by ▴ 110
1
vote
2
replies
1.2k
views
Identifying/Annotating Enhancers
bedtools R ENCODE
updated 2.4 years ago by 45k • written 2.5 years ago by ▴ 110
2
votes
1
reply
1.2k
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R Pivottabler
updated 2.5 years ago by 12k • written 2.5 years ago by ▴ 110
3
votes
1
reply
1.2k
views
How to Merge RNA Replicates
EdgeR FPKM RNA counts
updated 2.6 years ago by ★ 8.5k • written 2.6 years ago by ▴ 110
6
votes
3
replies
2.0k
views
How to make line graph with circles in R
R
updated 2.7 years ago by ★ 2.0k • written 2.7 years ago by ▴ 110
0
votes
0
replies
11k
views
Comment: Comment: Get TPM from RNA counts and gene length?
2.7 years ago by cthangav ▴ 110
0
votes
2
replies
11k
views
Comment: Comment: Get TPM from RNA counts and gene length?
2.7 years ago by cthangav ▴ 110
16
votes
14
replies
11k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR RNA counts TPM
2.2 years ago by cthangav ▴ 110
2
votes
1
reply
1.3k
views
Get GO Term Size from GO ID
GO-term R
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 110
2
votes
2
replies
1.2k
views
Genes With List of Go terms
go-terms GO
updated 2.3 years ago by 45k • written 2.8 years ago by ▴ 110
0
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0
replies
6.7k
views
Comment: Comment: Is the MACS pileup output normalized
2.8 years ago by cthangav ▴ 110
0
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0
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1.2k
views
Comment: Comment: Left Join Issue in R
2.9 years ago by cthangav ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: Left Join Issue in R
2.9 years ago by cthangav ▴ 110
2
votes
3
replies
1.2k
views
Left Join Issue in R
R
2.9 years ago by cthangav ▴ 110
2
votes
1
reply
944
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 3.0 years ago by 90k • written 3.0 years ago by ▴ 110
0
votes
0
replies
668
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport R RNA
3.5 years ago by cthangav ▴ 110
1
vote
2
replies
1.9k
views
How to deal with multiple transcripts of the same gene?
biology RNA-seq splicing transcripts RNA. genes
updated 3.7 years ago by 90k • written 3.7 years ago by ▴ 110
0
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0
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1.9k
views
Comment: Comment: How to deal with multiple transcripts of the same gene?
3.7 years ago by cthangav ▴ 110
0
votes
0
replies
962
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
4.0 years ago by cthangav ▴ 110
3
votes
2
replies
1.4k
views
Batch File For Loop Help
syntax
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 110
0
votes
0
replies
966
views
Feature selection
Feature Selection R
updated 4.2 years ago by 90k • written 4.2 years ago by ▴ 110
0
votes
0
replies
890
views
How to get Read Counts from MACS2 output files?
ATAC-seq pileup narrowpeak readcounts MACS2
4.2 years ago by cthangav ▴ 110
0
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0
replies
2.3k
views
Comment: Comment: Looking up Gene IDs in R
4.2 years ago by cthangav ▴ 110
0
votes
1
reply
2.3k
views
Comment: Comment: Looking up Gene IDs in R
4.2 years ago by cthangav ▴ 110
0
votes
1
reply
2.3k
views
Comment: Comment: Looking up Gene IDs in R
4.2 years ago by cthangav ▴ 110
5
votes
6
replies
2.3k
views
Looking up Gene IDs in R
R
4.2 years ago by cthangav ▴ 110
0
votes
0
replies
5.7k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
4.3 years ago by cthangav ▴ 110
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