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2
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260
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Identifying/Annotating Enhancers
enhancer R ENCODE bedtools
updated 3 days ago by 72k • written 4 days ago by ▴ 40
2
votes
1
reply
178
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R Pivottabler
updated 4 days ago by 11k • written 4 days ago by ▴ 40
3
votes
1
reply
224
views
How to Merge RNA Replicates
EdgeR FPKM RNA counts
updated 7 weeks ago by ★ 6.1k • written 7 weeks ago by ▴ 40
4
votes
3
replies
315
views
How to make line graph with circles in R
R
updated 11 weeks ago by ★ 2.0k • written 11 weeks ago by ▴ 40
0
votes
0
replies
1.4k
views
Comment: Comment: Get TPM from RNA counts and gene length?
3 months ago by cthangav ▴ 40
0
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2
replies
1.4k
views
Comment: Comment: Get TPM from RNA counts and gene length?
3 months ago by cthangav ▴ 40
12
votes
13
replies
1.4k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR RNA counts TPM
updated 11 weeks ago by 39k • written 3 months ago by ▴ 40
2
votes
1
reply
371
views
Get GO Term Size from GO ID
GO-term R
updated 4 months ago by 39k • written 4 months ago by ▴ 40
2
votes
2
replies
362
views
Genes With List of Go terms
List Genes GO Convert of terms to
updated 4 months ago by 154k • written 4 months ago by ▴ 40
0
votes
0
replies
5.5k
views
Comment: Comment: Is the MACS pileup output normalized
4 months ago by cthangav ▴ 40
0
votes
0
replies
442
views
Comment: Comment: Left Join Issue in R
5 months ago by cthangav ▴ 40
0
votes
1
reply
442
views
Comment: Comment: Left Join Issue in R
5 months ago by cthangav ▴ 40
2
votes
3
replies
442
views
Left Join Issue in R
R
5 months ago by cthangav ▴ 40
2
votes
1
reply
321
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 6 months ago by 72k • written 6 months ago by ▴ 40
0
votes
0
replies
301
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport R RNA
13 months ago by cthangav ▴ 40
1
vote
2
replies
511
views
How to deal with multiple transcripts of the same gene?
biology RNA-seq splicing transcripts RNA. genes
updated 15 months ago by 72k • written 15 months ago by ▴ 40
0
votes
0
replies
511
views
Comment: Comment: How to deal with multiple transcripts of the same gene?
15 months ago by cthangav ▴ 40
0
votes
0
replies
469
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
18 months ago by cthangav ▴ 40
3
votes
2
replies
589
views
Batch File For Loop Help
syntax
updated 20 months ago by 21k • written 20 months ago by ▴ 40
0
votes
0
replies
484
views
Feature selection
Feature Selection R
updated 20 months ago by 72k • written 20 months ago by ▴ 40
0
votes
0
replies
441
views
How to get Read Counts from MACS2 output files?
ATAC-seq pileup narrowpeak readcounts MACS2
20 months ago by cthangav ▴ 40
0
votes
0
replies
1.1k
views
Comment: Comment: Looking up Gene IDs in R
21 months ago by cthangav ▴ 40
0
votes
1
reply
1.1k
views
Comment: Comment: Looking up Gene IDs in R
21 months ago by cthangav ▴ 40
0
votes
1
reply
1.1k
views
Comment: Comment: Looking up Gene IDs in R
21 months ago by cthangav ▴ 40
5
votes
6
replies
1.1k
views
Looking up Gene IDs in R
R
21 months ago by cthangav ▴ 40
0
votes
0
replies
3.3k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
22 months ago by cthangav ▴ 40
0
votes
1
reply
3.3k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
22 months ago by cthangav ▴ 40
1
vote
5
replies
3.3k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 22 months ago by 39k • written 22 months ago by ▴ 40
0
votes
0
replies
864
views
Comment: Comment: Is the pileup value the ATAC-seq counts?
23 months ago by cthangav ▴ 40
0
votes
2
replies
864
views
Is the pileup value the ATAC-seq counts?
ATAC
23 months ago by cthangav ▴ 40
0
votes
1
reply
1.2k
views
Comment: Comment: Memory Error
2.1 years ago by cthangav ▴ 40
1
vote
1
reply
1.2k
views
Comment: Comment: Memory Error
2.1 years ago by cthangav ▴ 40
1
vote
5
replies
1.2k
views
Memory Error
R Memory MOFA
updated 2.1 years ago by ★ 2.3k • written 2.1 years ago by ▴ 40
0
votes
1
reply
2.2k
views
Is there a way to remove certain chromosomes from a GRanges Object?
GenomicRanges Package GRanges
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Comment: Comment: R command worked yesterday, but stalls today?
2.1 years ago by cthangav ▴ 40
5
votes
4
replies
1.0k
views
R command worked yesterday, but stalls today?
R
2.1 years ago by cthangav ▴ 40
0
votes
1
reply
1.2k
views
In enrichGO, BP subontology doesn't work, but CC ontology does?
R gene ontology clusterProfiler
updated 2.4 years ago by 20 • written 2.9 years ago by ▴ 40
0
votes
0
replies
628
views
Comparing Many Bed Files from GEO
ChIP-Seq ATAC-seq Meta-Analysis Bed GEO
2.6 years ago by cthangav ▴ 40
0
votes
1
reply
15k
views
Comment: C: How to Make Dot Plots of GO Terms?
2.8 years ago by cthangav ▴ 40
13
votes
7
replies
15k
views
7 follow
How to Make Dot Plots of GO Terms?
R dot plot gene ontology
updated 15 months ago by • 0 • written 2.8 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Comment: C: No enriched terms in enrichGO
2.9 years ago by cthangav ▴ 40
41 results • Page 1 of 1
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