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comments
1
vote
2
replies
260
views
Identifying/Annotating Enhancers
enhancer
R
ENCODE
bedtools
updated 3 days ago by
ATpoint
72k • written 4 days ago by
cthangav
▴ 40
2
votes
1
reply
178
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R
Pivottabler
updated 4 days ago by
zx8754
11k • written 4 days ago by
cthangav
▴ 40
3
votes
1
reply
224
views
How to Merge RNA Replicates
EdgeR
FPKM
RNA
counts
updated 7 weeks ago by
Gordon Smyth
★ 6.1k • written 7 weeks ago by
cthangav
▴ 40
4
votes
3
replies
315
views
How to make line graph with circles in R
R
updated 11 weeks ago by
Chirag Parsania
★ 2.0k • written 11 weeks ago by
cthangav
▴ 40
0
votes
0
replies
1.4k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
3 months ago by
cthangav
▴ 40
0
votes
2
replies
1.4k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
3 months ago by
cthangav
▴ 40
12
votes
13
replies
1.4k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR
RNA
counts
TPM
updated 11 weeks ago by
Ram
39k • written 3 months ago by
cthangav
▴ 40
2
votes
1
reply
371
views
Get GO Term Size from GO ID
GO-term
R
updated 4 months ago by
Ram
39k • written 4 months ago by
cthangav
▴ 40
2
votes
2
replies
362
views
Genes With List of Go terms
List
Genes
GO
Convert
of
terms
to
updated 4 months ago by
Pierre Lindenbaum
154k • written 4 months ago by
cthangav
▴ 40
0
votes
0
replies
5.5k
views
Comment:
Comment: Is the MACS pileup output normalized
4 months ago by
cthangav
▴ 40
0
votes
0
replies
442
views
Comment:
Comment: Left Join Issue in R
5 months ago by
cthangav
▴ 40
0
votes
1
reply
442
views
Comment:
Comment: Left Join Issue in R
5 months ago by
cthangav
▴ 40
2
votes
3
replies
442
views
Left Join Issue in R
R
5 months ago by
cthangav
▴ 40
2
votes
1
reply
321
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 6 months ago by
ATpoint
72k • written 6 months ago by
cthangav
▴ 40
0
votes
0
replies
301
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport
R
RNA
13 months ago by
cthangav
▴ 40
1
vote
2
replies
511
views
How to deal with multiple transcripts of the same gene?
biology
RNA-seq
splicing
transcripts
RNA.
genes
updated 15 months ago by
ATpoint
72k • written 15 months ago by
cthangav
▴ 40
0
votes
0
replies
511
views
Comment:
Comment: How to deal with multiple transcripts of the same gene?
15 months ago by
cthangav
▴ 40
0
votes
0
replies
469
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
18 months ago by
cthangav
▴ 40
3
votes
2
replies
589
views
Batch File For Loop Help
syntax
updated 20 months ago by
cpad0112
21k • written 20 months ago by
cthangav
▴ 40
0
votes
0
replies
484
views
Feature selection
Feature
Selection
R
updated 20 months ago by
ATpoint
72k • written 20 months ago by
cthangav
▴ 40
0
votes
0
replies
441
views
How to get Read Counts from MACS2 output files?
ATAC-seq
pileup
narrowpeak
readcounts
MACS2
20 months ago by
cthangav
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: Looking up Gene IDs in R
21 months ago by
cthangav
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: Looking up Gene IDs in R
21 months ago by
cthangav
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: Looking up Gene IDs in R
21 months ago by
cthangav
▴ 40
5
votes
6
replies
1.1k
views
Looking up Gene IDs in R
R
21 months ago by
cthangav
▴ 40
0
votes
0
replies
3.3k
views
Comment:
Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
22 months ago by
cthangav
▴ 40
0
votes
1
reply
3.3k
views
Comment:
Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
22 months ago by
cthangav
▴ 40
1
vote
5
replies
3.3k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 22 months ago by
Ram
39k • written 22 months ago by
cthangav
▴ 40
0
votes
0
replies
864
views
Comment:
Comment: Is the pileup value the ATAC-seq counts?
23 months ago by
cthangav
▴ 40
0
votes
2
replies
864
views
Is the pileup value the ATAC-seq counts?
ATAC
23 months ago by
cthangav
▴ 40
0
votes
1
reply
1.2k
views
Comment:
Comment: Memory Error
2.1 years ago by
cthangav
▴ 40
1
vote
1
reply
1.2k
views
Comment:
Comment: Memory Error
2.1 years ago by
cthangav
▴ 40
1
vote
5
replies
1.2k
views
Memory Error
R
Memory
MOFA
updated 2.1 years ago by
Dunois
★ 2.3k • written 2.1 years ago by
cthangav
▴ 40
0
votes
1
reply
2.2k
views
Is there a way to remove certain chromosomes from a GRanges Object?
GenomicRanges
Package
GRanges
updated 2.1 years ago by
cpad0112
21k • written 2.1 years ago by
cthangav
▴ 40
0
votes
0
replies
1.0k
views
Comment:
Comment: R command worked yesterday, but stalls today?
2.1 years ago by
cthangav
▴ 40
5
votes
4
replies
1.0k
views
R command worked yesterday, but stalls today?
R
2.1 years ago by
cthangav
▴ 40
0
votes
1
reply
1.2k
views
In enrichGO, BP subontology doesn't work, but CC ontology does?
R
gene ontology
clusterProfiler
updated 2.4 years ago by
Biostar
20 • written 2.9 years ago by
cthangav
▴ 40
0
votes
0
replies
628
views
Comparing Many Bed Files from GEO
ChIP-Seq
ATAC-seq
Meta-Analysis
Bed
GEO
2.6 years ago by
cthangav
▴ 40
0
votes
1
reply
15k
views
Comment:
C: How to Make Dot Plots of GO Terms?
2.8 years ago by
cthangav
▴ 40
13
votes
7
replies
15k
views
7 follow
How to Make Dot Plots of GO Terms?
R
dot plot
gene ontology
updated 15 months ago by
azad.mahnaz228
• 0 • written 2.8 years ago by
cthangav
▴ 40
0
votes
0
replies
1.2k
views
Comment:
C: No enriched terms in enrichGO
2.9 years ago by
cthangav
▴ 40
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