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Recommendations for extending contigs from denovo assembly to identify SV insertion sites on chromosome
Nanopore WGS Long-Read SV Assembly
updated 6 months ago by 20k • written 7 months ago by ▴ 70
0
votes
0
replies
509
views
Recommended workflow for identifying the genomic location and copy-number of an insert with a known sequence from WGS Nanopore fastq files
Nanopore WGS Long-Read
updated 7 months ago by 43k • written 7 months ago by ▴ 70
3
votes
8
replies
4.9k
views
8 follow
Using AWS for Bioinformatics
unix Cluster
updated 13 months ago by 2.8k • written 2.5 years ago by ▴ 70
1
vote
6
replies
993
views
Handling Multiple Sequencing Runs in scRNA-seq
scRNA-seq
18 months ago by dk0319 ▴ 70
0
votes
1
reply
602
views
Harmonized RNA-Seq Analysis of Different GDC Queried Projects
GDC Normalization DGE RNA-Seq
updated 22 months ago by ★ 1.2k • written 23 months ago by ▴ 70
6
votes
7
replies
2.3k
views
Genome Size Estimation with Jellyfish and Genome Scope is Unexpectedly Small
genome ChIP-Seq jellyfish
updated 2.4 years ago by 54k • written 2.4 years ago by ▴ 70
0
votes
0
replies
491
views
How best to handle multiple probes for single genes in survival analysis of Geo data
expression microarray gene
2.5 years ago by dk0319 ▴ 70
4
votes
4
replies
1.7k
views
Database for Enhancers with Coordinates
ChIP-Seq genome
updated 2.6 years ago by ★ 2.9k • written 2.6 years ago by ▴ 70
0
votes
3
replies
765
views
Package to predict genomic variants from rna-seq read data
Genomics rna-seq
3.1 years ago by dk0319 ▴ 70
0
votes
1
reply
815
views
Altering bioawk script to take list.txt file as a command line parameter
bash shell-script
updated 16 months ago by 43k • written 3.1 years ago by ▴ 70
3
votes
6
replies
1.5k
views
Selecting genotypes for a specific chromosome belonging to a specific patient from a multi patient VCF file
sequence
3.1 years ago by dk0319 ▴ 70
0
votes
1
reply
996
views
Altering a python script to calculate GC content
sequence
updated 3.1 years ago by ★ 27k • written 3.1 years ago by ▴ 70
0
votes
0
replies
460
views
Altering a python script to calculate GC content
sequence
3.1 years ago by dk0319 ▴ 70
0
votes
2
replies
554
views
How much sequencing coverage do you need in order to detect SNP's across the whole genome
sequencing SNP ChIP-Seq next-gen
3.1 years ago by dk0319 ▴ 70
1
vote
1
reply
759
views
Bionano Saphyr Structural Variant ID and Genome Assembly
Assembly genome
updated 14 months ago by 43k • written 3.2 years ago by ▴ 70
5
votes
11
replies
2.0k
views
Large Count Discrepancy of Key Gene Between STAR and HISAT2
RNA-Seq alignment
3.3 years ago by dk0319 ▴ 70
3
votes
2
replies
1.9k
views
Best way to get gene IDs for Salmon transcript output
RNA-Seq R
3.3 years ago by dk0319 ▴ 70
10
votes
6
replies
1.6k
views
Differential Expression Analysis with Salmon vs Genomic Aligners Like Star
RNA-Seq alignment
updated 3.3 years ago by 14k • written 3.3 years ago by ▴ 70
3
votes
13
replies
1.4k
views
Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
rna-seq
updated 3.4 years ago by ★ 3.7k • written 3.4 years ago by ▴ 70
2
votes
5
replies
1.0k
views
Tools for generating a list of known DNA binding motifs for a DNA binding protein
ChIP-Seq
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 70
5
votes
5
replies
4.2k
views
Most efficient way to convert Counts to RPKM
R rna-seq
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 70
2
votes
1
reply
540
views
Tools for Discovering Genes Containing a DNA motif
ChIP-Seq genome
updated 3.5 years ago by ★ 16k • written 3.5 years ago by ▴ 70
2
votes
7
replies
1.4k
views
Using bedtools to identify genes that have overlapping chip-seq peaks
bedtools ChIP-Seq
updated 3.5 years ago by ▴ 10 • written 3.5 years ago by ▴ 70
2
votes
3
replies
615
views
Whole Genome Seq Analysis Software for Identifying Specific Gene Variants
next-gen sequencing
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 70
1
vote
4
replies
2.5k
views
Issues with reading .bed files and compressing output in a specific format
bed python gzip
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 70
1
vote
2
replies
1.2k
views
HTseq feature count handling of transcripts with shared exons?
RNA-Seq htseq DGE
updated 3.6 years ago by 19k • written 3.6 years ago by ▴ 70
1
vote
1
reply
658
views
Resources for learning how to submit jobs in unix-based cluster
Cluster unix
updated 10 months ago by 43k • written 3.6 years ago by ▴ 70
0
votes
2
replies
909
views
Mouse Tissue Specific Transcriptome Databases
genome rna-seq
3.7 years ago by dk0319 ▴ 70
1
vote
3
replies
1.1k
views
Extracting Unmapped Reads from BAM files using Rsamtools
RNA-Seq R next-gen Rsamtools samtools
updated 3.8 years ago by ▴ 520 • written 3.8 years ago by ▴ 70
29 results • Page 1 of 1
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