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multi-population vcf filtering for population genomics analysis
Filtering WGS Genomics Population VCF
2.1 years ago by qstefano ▴ 20
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1
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1.2k
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Comment: Comment: Excluding SNPs from repetitive regions
2.8 years ago by qstefano ▴ 20
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3
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1.2k
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Excluding SNPs from repetitive regions
Population-Genomics WGS Variant VCF
updated 2.8 years ago by 166k • written 2.8 years ago by ▴ 20
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0
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573
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PCA analysis of two population
WGS SNPs plot PCA Population
3.1 years ago by qstefano ▴ 20
2
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1
reply
947
views
Relevance of alignments filtering before variant calling
Filtering WGS Alignment Variant
updated 3.3 years ago by 166k • written 3.3 years ago by ▴ 20
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1
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1.6k
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Comment: Comment: double free or corruption (!prev): 0x00002aacc7b6b780 *** while running featurec
3.3 years ago by qstefano ▴ 20
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5
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1.6k
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double free or corruption (!prev): 0x00002aacc7b6b780 *** while running featurecounts
Counting Bash HPC RNA-Seq R
updated 3.3 years ago by 89k • written 3.3 years ago by ▴ 20
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600
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How can i exclude genetic variability inherited from parents in offspring ?
Genomics Haplotypes WGS VCF Population
3.3 years ago by qstefano ▴ 20
2
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1
reply
685
views
Extract 'endpos' feature from bam file
Alignment BAM RNA-Seq samtools
updated 2.4 years ago by 45k • written 3.4 years ago by ▴ 20
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0
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712
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Variant calling for pool-seq data
Pool-Seq DNA-Seq Variants variant.calling
3.6 years ago by qstefano ▴ 20
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0
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1.3k
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Comment: Comment: [bwa_aln_core] calculate SA coordinate... script.sh: line 91: 183402 Killed
3.8 years ago by qstefano ▴ 20
3
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3
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1.3k
views
[bwa_aln_core] calculate SA coordinate... script.sh: line 91: 183402 Killed
HPC BWA Alignment
updated 2.5 years ago by 45k • written 3.8 years ago by ▴ 20
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1
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1.1k
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Explanation of dimension differences between bam files (BWA aln and BWA mem)
R RNA-Seq bwa gene alignment
updated 3.8 years ago by 3.5k • written 3.8 years ago by ▴ 20
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4.1k
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Comment: Comment: Installation of samtools on anaconda
3.9 years ago by qstefano ▴ 20
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2
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4.1k
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Installation of samtools on anaconda
Env HPC Anaconda Bash
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 20
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0
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908
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biomartr::getGenome() issue
RefSeq R Assembly NCBI Package
3.9 years ago by qstefano ▴ 20
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0
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1.2k
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Comment: Comment: Assign experimental groups and replicates within a GSE properly
4.0 years ago by qstefano ▴ 20
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2
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1.2k
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Assign experimental groups and replicates within a GSE properly
R RNASeq GEO Datasets NCBI
4.0 years ago by qstefano ▴ 20
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0
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801
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Run TSS predator without TEX wig libraries
RNA-Seq sequencing next-gen software error
4.6 years ago by qstefano ▴ 20
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0
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1.6k
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Comment: C: TSS predator input files
4.6 years ago by qstefano ▴ 20
4
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2
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1.6k
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TSS predator input files
RNA-Seq software error alignment
updated 4.6 years ago by ★ 2.1k • written 4.6 years ago by ▴ 20
1
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1
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714
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Rockhopper tool help
RNA-Seq R next-gen alignment
4.7 years ago by qstefano ▴ 20
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0
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2.2k
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Comment: C: Conversion of GFF3 file to ptt format
4.7 years ago by qstefano ▴ 20
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1
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2.2k
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Comment: C: Conversion of GFF3 file to ptt format
4.7 years ago by qstefano ▴ 20
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4
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2.2k
views
Conversion of GFF3 file to ptt format
RNA-Seq alignment R sequencing next-gen
4.7 years ago by qstefano ▴ 20
3
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2
replies
1.1k
views
Statistic test for percentiles values
RNA-Seq R sequencing
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 20
3
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2
replies
1.1k
views
Normalization of RNA seq expression values between different experiments
RNA-Seq rna-seq sequencing R gene
updated 4.9 years ago by ▴ 180 • written 4.9 years ago by ▴ 20
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0
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798
views
Normalization of RNA-Seq gene expression values between several GSEs
RNA-Seq R next-gen sequencing gene
4.9 years ago by qstefano ▴ 20
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0
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1.4k
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Comment: C: Alignment of single/paired end reads with rsubread align
5.0 years ago by qstefano ▴ 20
3
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5
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1.4k
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Alignment of single/paired end reads with rsubread align
RNA-Seq alignment R sequencing genome
5.0 years ago by qstefano ▴ 20
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1
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4.5k
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Comment: C: Reads mapped on wrong strand
5.0 years ago by qstefano ▴ 20
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1
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4.5k
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Comment: C: Reads mapped on wrong strand
5.0 years ago by qstefano ▴ 20
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4.5k
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Comment: C: Reads mapped on wrong strand
5.0 years ago by qstefano ▴ 20
6
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10
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4.5k
views
Reads mapped on wrong strand
RNA-Seq R alignment gene
5.0 years ago by qstefano ▴ 20
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0
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707
views
Normalization method for DE analysis between different experiments (GSE)
RNA-Seq next-gen sequencing R
5.0 years ago by qstefano ▴ 20
1
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3
replies
820
views
Distinguish sample growth condition in Biosample
RNA-Seq rna-seq
5.1 years ago by qstefano ▴ 20
36 results • Page 1 of 1
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