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200
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Gene names/ids on annotated protein files
bash
Protein
GFF
annotation
updated 3 months ago by
GenoMax
130k • written 3 months ago by
nitinra
▴ 50
0
votes
1
reply
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
0
votes
1
reply
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
0
votes
0
replies
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
0
votes
1
reply
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
0
votes
1
reply
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
0
votes
0
replies
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
0
votes
1
reply
1.1k
views
Comment:
Comment: Ete3 build - ValueError: Error parsing Phyml result
7 months ago by
nitinra
▴ 50
1
vote
13
replies
1.1k
views
Ete3 build - ValueError: Error parsing Phyml result
ete3
ete3toolkit
ete
phyml
build
updated 7 months ago by
Matthias Zepper
3.7k • written 7 months ago by
nitinra
▴ 50
6
votes
3
replies
790
views
How to add column name to each cell using bash?
bash
linux
awk
updated 7 months ago by
GenoMax
130k • written 7 months ago by
nitinra
▴ 50
8
votes
3
replies
648
views
Problem adding file names to fasta headers in multiple directories using awk
fasta
awk
bash
updated 7 months ago by
ole.tange
★ 4.3k • written 7 months ago by
nitinra
▴ 50
4
votes
4
replies
727
views
Retaining parts of the header file in multiple fasta files.
gnu
awk
fasta
updated 5 weeks ago by
Vincent Laufer
★ 3.0k • written 9 months ago by
nitinra
▴ 50
1
vote
1
reply
1.6k
views
Different estimates of nucleotide diversity (pi) from two pipelines: pixy vs vcftools
vcftools
nucleotide diversity
pixy
updated 9 months ago by
Sumaya
• 0 • written 2.4 years ago by
nitinra
▴ 50
4
votes
4
replies
538
views
Annotation of multiple reference genomes
reference
phylogenomics
annotation
updated 14 months ago by
GenoMax
130k • written 14 months ago by
nitinra
▴ 50
0
votes
1
reply
538
views
Comment:
Comment: Annotation of multiple reference genomes
14 months ago by
nitinra
▴ 50
0
votes
0
replies
340
views
High positive values in vcftools --het results
wgs
snpfilter
vcftools
gatk
19 months ago by
nitinra
▴ 50
1
vote
1
reply
2.4k
views
Interpreting nucleotide diversity
nucleotide diversity
π
SNP
updated 2.3 years ago by
Biostar
20 • written 2.3 years ago by
nitinra
▴ 50
0
votes
0
replies
7.0k
views
Comment:
Comment: Back-filling missing genotypes in merged VCF
updated 15 months ago by
Ram
39k • written 2.5 years ago by
nitinra
▴ 50
0
votes
1
reply
618
views
Comment:
C: How to generate a tab limited genome co-odinate file from a reference - bedtools
2.5 years ago by
nitinra
▴ 50
1
vote
1
reply
1.0k
views
Answer:
A: Nucleotide diversity between population
2.5 years ago by
nitinra
▴ 50
4
votes
4
replies
618
views
How to generate a tab limited genome co-odinate file from a reference - bedtools
genome
SNP
bedtools
2.5 years ago by
nitinra
▴ 50
0
votes
0
replies
2.3k
views
Comment:
C: Merge CNVnator and Lumpy to find out copy number variants
2.5 years ago by
nitinra
▴ 50
3
votes
3
replies
951
views
How to setup a mac for genomic analysis
next-gen
software installation
updated 2.5 years ago by
GenoMax
130k • written 2.5 years ago by
nitinra
▴ 50
0
votes
0
replies
693
views
Determining breakpoint size in cnvnator-lumpy pipeline
lumpy
cnvnator
cnv
sv
2.5 years ago by
nitinra
▴ 50
0
votes
0
replies
935
views
Pipeline for merging vcf files from lumpy and cnvnator and sv filtering
cnv
sv
wgs
2.5 years ago by
nitinra
▴ 50
2
votes
1
reply
2.5k
views
Error while merging multiple vcf files using Picard MergeVcfs
snp
genome
picard
gatk
Tool
updated 2.6 years ago by
haizi.zh
▴ 20 • written 2.7 years ago by
nitinra
▴ 50
2
votes
1
reply
756
views
How to distinguish selection vs population demography from Tajima's D test
SNP
Tajima
population genetics
vcf
updated 2.6 years ago by
h.mon
34k • written 2.6 years ago by
nitinra
▴ 50
0
votes
0
replies
1.3k
views
Negative Fst values from VCFtools result
vcftool
fst
genome
SNP
updated 2.7 years ago by
GenoMax
130k • written 2.7 years ago by
nitinra
▴ 50
0
votes
1
reply
979
views
Comment:
C: Handing scafflold names for plink bed file
2.7 years ago by
nitinra
▴ 50
0
votes
4
replies
979
views
Handing scafflold names for plink bed file
bed
plink
snp
genome
updated 9 weeks ago by
dobata
• 0 • written 2.7 years ago by
nitinra
▴ 50
0
votes
2
replies
594
views
Bedtools merge messing chromosome start - end points
genome
merge
bedtools merge
bedtools
updated 2.7 years ago by
Jorge Amigo
14k • written 2.7 years ago by
nitinra
▴ 50
8
votes
2
replies
1.5k
views
merging multiple vcfs by column in Picard
vcf
SNP
genome
picard
updated 2.7 years ago by
Pierre Lindenbaum
155k • written 2.7 years ago by
nitinra
▴ 50
3
votes
1
reply
1.1k
views
Plotting large file size of bedtools genomecov output
bedtools
genomecov
genome
coverage
depth
updated 2.7 years ago by
Pierre Lindenbaum
155k • written 2.7 years ago by
nitinra
▴ 50
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