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5
votes
3
replies
2.2k
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Program/Tool that can determine whether two profiles are likely to be from the same cell line, based on sequence analysis (RNA seq and Chip Seq).
RNA-Seq next-gen ChIP-Seq
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 500
1
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1
reply
9.4k
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voom : mean variance trend plot, How to interpret the plot
Limma RNA-Seq voom
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 500
0
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1
reply
2.8k
views
Chipster - launching Problem
VM chipster
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 500
4
votes
10
replies
5.4k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq TCGA
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
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0
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3.4k
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Comment: Comment: Breast cancer TCGA data - DGE analysis
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
3
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3
replies
3.4k
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Breast cancer TCGA data - DGE analysis
RNA-Seq Voom Raw_Count TCGA
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
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1
reply
13k
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Comment: Comment: Can Limma package be used for RNA-Seq Differential gene expression analysis for
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
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1
reply
13k
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Comment: Comment: Can Limma package be used for RNA-Seq Differential gene expression analysis for
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
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1
reply
13k
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Comment: Comment: Can Limma package be used for RNA-Seq Differential gene expression analysis for
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
votes
1
reply
13k
views
Comment: Comment: Can Limma package be used for RNA-Seq Differential gene expression analysis for
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
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1
reply
6.2k
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Comment: C: Genomic Matrix data from TCGA need to be analysied for Differential gene express
10.5 years ago by David_emir ▴ 500
0
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0
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6.2k
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Comment: Comment: Genomic Matrix data from TCGA need to be analysied for Differential gene express
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
0
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2
replies
5.4k
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Comment: Comment: TCGA normalized count data of 1000 samples for DGE
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 500
6
votes
6
replies
7.9k
views
Trimmomatic not able to remove low sequence bases
trimmomatic seq RNA
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 500
0
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0
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2.6k
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Calculating AUC for individual Probe ID(affy)
AUC ROC Affymetry
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 500
0
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1
reply
2.7k
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Comment: C: rna seq public databases
10.8 years ago by David_emir ▴ 500
0
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2
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2.7k
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Comment: C: rna seq public databases
10.8 years ago by David_emir ▴ 500
0
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1
reply
5.2k
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Comment: Comment: Quality control & Processing of RNA seq data
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 500
2
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5
replies
4.4k
views
Annotating RNA-seq gene ids (differentially expressed)
RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 500
0
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0
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4.4k
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Comment: C: Annotating RNA-seq gene ids (differentially expressed)
10.9 years ago by David_emir ▴ 500
0
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1
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4.4k
views
Comment: Comment: Annotating RNA-seq gene ids (differentially expressed)
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 500
3
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4
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2.7k
views
ERROR RNA SEQ QC analysis step
RNA-Seq
updated 11.0 years ago by ★ 3.2k • written 11.0 years ago by ▴ 500
0
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0
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5.0k
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Comment: Comment: Tophat Protocol - nature paper
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 500
1
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1
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3.6k
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Comment: C: Error RNA-seq data, TOPHAT
11.0 years ago by David_emir ▴ 500
0
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0
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3.6k
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Comment: Comment: Error RNA-seq data, TOPHAT
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 500
0
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1
reply
5.0k
views
Comment: Comment: Tophat Protocol - nature paper
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 500
0
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0
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5.0k
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Comment: C: Tophat Protocol - nature paper
11.0 years ago by David_emir ▴ 500
7
votes
5
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5.0k
views
Tophat Protocol - nature paper
RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 500
1
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1
reply
6.7k
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Comment: C: Pre-processing And Quality Control of the Raw NGS Data -- > trimming
11.0 years ago by David_emir ▴ 500
0
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0
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6.7k
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Comment: C: Pre-processing And Quality Control of the Raw NGS Data -- > trimming
11.0 years ago by David_emir ▴ 500
9
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10
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6.7k
views
Pre-processing And Quality Control of the Raw NGS Data -- > trimming
RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 500
0
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0
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6.7k
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Comment: C: Pre-processing And Quality Control of the Raw NGS Data -- > trimming
11.0 years ago by David_emir ▴ 500
0
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1
reply
6.7k
views
Comment: C: Pre-processing And Quality Control of the Raw NGS Data -- > trimming
11.0 years ago by David_emir ▴ 500
0
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0
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2.7k
views
Comment: C: ERROR RNA SEQ QC analysis step
11.0 years ago by David_emir ▴ 500
0
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1
reply
2.7k
views
Comment: C: ERROR RNA SEQ QC analysis step
updated 11.0 years ago by 45k • written 11.0 years ago by ▴ 500
2
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3
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2.5k
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To Generate biological hypotheses based on the specific genetic abnormalities of the cancer cell lines.
Hypotheses-generation cell-lines IC50
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 500
0
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1
reply
2.5k
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Comment: C: To Generate biological hypotheses based on the specific genetic abnormalities of
11.0 years ago by David_emir ▴ 500
0
votes
1
reply
1.7k
views
What Types Of Analyses Are Typically Done After Snp Genotyping?
analysis genotype snp
12.3 years ago by David_emir ▴ 500
38
votes
7
replies
17k
views
How To Get Started Learning Gwas Analysis
gwas pathway analysis imputation
updated 12.3 years ago by ★ 1.1k • written 12.3 years ago by ▴ 500
0
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1
reply
3.0k
views
How To Perform Gender Stratification Analysis For Gwas Data
gwas pipeline plink pathway
updated 12.3 years ago by 103k • written 12.3 years ago by ▴ 500
0
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1
reply
17k
views
Comment: C: How To Get Started Learning Gwas Analysis
12.3 years ago by David_emir ▴ 500
191 results • Page 4 of 4
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