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372
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Reteroviruses in shotgun metgaenome data
genomics Metagenomics Microbial Viruses RNA-Viruses
11 months ago by serene.s • 0
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0
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662
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Comment: Comment: Metagenome Assembly
20 months ago by serene.s • 0
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2
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662
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Metagenome Assembly
taxonomy Assembly Binning Metagenomics
20 months ago by serene.s • 0
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0
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522
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Comment: Comment: extract 16sRNA genes from assembled contigs
21 months ago by serene.s • 0
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2
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522
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extract 16sRNA genes from assembled contigs
Functional Binning Annotation Assemly Metageenomics
21 months ago by serene.s • 0
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1
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890
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metagenome binning using MaxBin2 for each dataset
Metagenome Binning MaxBin
updated 22 months ago by 3.6k • written 22 months ago by • 0
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1
reply
1.5k
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kraken2 paired end reads not processing
metagenomics kraken2
updated 22 months ago by 8.4k • written 22 months ago by • 0
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1
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502
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functional annotation of metagenomic contigs
Assembly Functions Metageenomics taxonomy Annotation
updated 23 months ago by 15k • written 23 months ago by • 0
3
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6
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1.1k
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assign taxonomy to bins
Metageenomics taxonomy Binning
updated 2.0 years ago by 3.6k • written 2.0 years ago by • 0
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1
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1.1k
views
Answer: Answer: assign taxonomy to bins
2.0 years ago by serene.s • 0
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1
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2.1k
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Comment: Comment: How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2?
2.0 years ago by serene.s • 0
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0
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329
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How to determine the relative abundance
Abundance Relative Genomics Metagenomics
2.1 years ago by serene.s • 0
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0
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1.5k
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Comment: Comment: Process to merge biom files
2.2 years ago by serene.s • 0
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0
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3.9k
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Comment: Comment: Importing MetaPhlAn3 profile table into phyloseq to use decontam
2.3 years ago by serene.s • 0
0
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3
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2.0k
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Average Read length
NGS genomics Metagenomics Reads
updated 2.3 years ago by 6.3k • written 2.3 years ago by • 0
2
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2
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836
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Subsampling metagenomics reads via reformat.sh
NGS genomics Metagenomics Reads
2.3 years ago by serene.s • 0
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0
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836
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Comment: Comment: Subsampling metagenomics reads via reformat.sh
2.3 years ago by serene.s • 0
0
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1
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649
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using a singualrity application ARGs-OAP
Data-Analysis WholeShotgunMetagenome AMR Microbiome Metagenomics
updated 2.7 years ago by 81k • written 2.7 years ago by • 0
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0
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595
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hclust2.py heatmap in MetaPhlAn3 --ftop features
MetaPhlAn3 Data-Analysis WholeShotgunMetagenome Microbiome Metagenomics
2.8 years ago by serene.s • 0
0
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0
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1.3k
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Comment: Comment: Maxbin2 usage for paired end reads
2.8 years ago by serene.s • 0
0
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1
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727
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Rarefy metagenomic adatasets for taxonomic profiling using MetaPhlAn3
metagenomics Rarefy MetaPhaln3 Genomics
updated 2.8 years ago by 3.6k • written 2.8 years ago by • 0
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0
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5.6k
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Comment: Comment: Shotgun rarefactions - metagenomics (microbiome), MetaPhlAn2
2.8 years ago by serene.s • 0
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0
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2.1k
views
Answer: Answer: What are the input files for lwaldron / metaphlanToPhyloseq.R ?
2.8 years ago by serene.s • 0
0
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1
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1.1k
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import metaphlan3 output to Phyloseq
Phyloseq metagenomics MetaPhaln3 Genomics
updated 2.8 years ago by 3.2k • written 2.8 years ago by • 0
0
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0
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1.1k
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Comment: Comment: FastQC report of the metagenomic data
2.9 years ago by serene.s • 0
1
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2
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1.1k
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FastQC report of the metagenomic data
Metagenomics Microbiome WholeShotgunMetagenome FastQC Data-Analysis
2.9 years ago by serene.s • 0
0
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1
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767
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Comment: Comment: top 25 species from all sample datasets
2.9 years ago by serene.s • 0
0
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3
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767
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top 25 species from all sample datasets
Metagenomics Data-Analysis WholeShotgunMetagenome Microbiome
updated 2.9 years ago by ★ 1.6k • written 2.9 years ago by • 0
1
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1
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984
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MEGAN6 Ultimate Edition
Metagenomics MEGAN6
updated 2.9 years ago by 20 • written 2.9 years ago by • 0
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1
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4.4k
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Comment: Comment: Parsing a Megan (RMA) File
3.0 years ago by serene.s • 0
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0
replies
1.2k
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Comment: Comment: extract pathogens from metaphlan3 results
3.0 years ago by serene.s • 0
0
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2
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1.2k
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extract pathogens from metaphlan3 results
analysis MetaPhlAn3 Metagenome genomics
3.0 years ago by serene.s • 0
0
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0
replies
1.3k
views
Comment: Comment: How does e value for diamond blastx affects the result
3.0 years ago by serene.s • 0
2
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2
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1.3k
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How does e value for diamond blastx affects the result
analysis metagenomics genomics data
3.0 years ago by serene.s • 0
0
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0
replies
2.0k
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Comment: Comment: normalize different size fastq files
3.0 years ago by serene.s • 0
0
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0
replies
2.0k
views
Comment: Comment: normalize different size fastq files
3.0 years ago by serene.s • 0
3
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5
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2.0k
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normalize different size fastq files
metagenome data genomics normalization
3.0 years ago by serene.s • 0
0
votes
0
replies
515
views
Tool for pathogen Detection from metagenome
metagenome genomics
updated 10 months ago by 43k • written 3.0 years ago by • 0
0
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0
replies
513
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Taxonomic Bar Plots for too many values
taxonomy
updated 16 months ago by 43k • written 3.1 years ago by • 0
3
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4
replies
1.8k
views
paired end metagenomics analysis
sequence genome alignment metagenome shotgun
updated 3.1 years ago by 21k • written 3.3 years ago by • 0
40 results • Page 1 of 1
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