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How to determine the relative abundance
Abundance Relative Genomics Metagenomics
updated 6 weeks ago by ▴ 30 • written 3.6 years ago by • 0
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0
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574
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Reteroviruses in shotgun metgaenome data
genomics Metagenomics Microbial Viruses RNA-Viruses
2.4 years ago by serene.s • 0
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1.1k
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Comment: Comment: Metagenome Assembly
3.2 years ago by serene.s • 0
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2
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1.1k
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Metagenome Assembly
taxonomy Assembly Binning Metagenomics
3.2 years ago by serene.s • 0
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0
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920
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Comment: Comment: extract 16sRNA genes from assembled contigs
3.3 years ago by serene.s • 0
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2
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920
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extract 16sRNA genes from assembled contigs
Functional Binning Annotation Assemly Metageenomics
3.3 years ago by serene.s • 0
1
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1
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1.5k
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metagenome binning using MaxBin2 for each dataset
Metagenome Binning MaxBin
updated 3.3 years ago by 3.9k • written 3.3 years ago by • 0
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1
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2.1k
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kraken2 paired end reads not processing
metagenomics kraken2
updated 3.3 years ago by 8.7k • written 3.3 years ago by • 0
0
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1
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720
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functional annotation of metagenomic contigs
Assembly Functions Metageenomics taxonomy Annotation
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
3
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6
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2.1k
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assign taxonomy to bins
Metageenomics taxonomy Binning
updated 3.5 years ago by 3.9k • written 3.5 years ago by • 0
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1
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2.1k
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Answer: Answer: assign taxonomy to bins
3.5 years ago by serene.s • 0
0
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1
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9.4k
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Comment: Comment: How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2?
3.5 years ago by serene.s • 0
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0
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1.9k
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Comment: Comment: Process to merge biom files
3.7 years ago by serene.s • 0
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0
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5.3k
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Comment: Comment: Importing MetaPhlAn3 profile table into phyloseq to use decontam
3.7 years ago by serene.s • 0
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3
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3.6k
views
Average Read length
NGS genomics Metagenomics Reads
updated 3.8 years ago by 8.0k • written 3.8 years ago by • 0
2
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2
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1.2k
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Subsampling metagenomics reads via reformat.sh
NGS genomics Metagenomics Reads
3.8 years ago by serene.s • 0
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0
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1.2k
views
Comment: Comment: Subsampling metagenomics reads via reformat.sh
3.8 years ago by serene.s • 0
0
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1
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1.1k
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using a singualrity application ARGs-OAP
Data-Analysis WholeShotgunMetagenome AMR Microbiome Metagenomics
updated 4.2 years ago by 89k • written 4.2 years ago by • 0
0
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0
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896
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hclust2.py heatmap in MetaPhlAn3 --ftop features
MetaPhlAn3 Data-Analysis WholeShotgunMetagenome Microbiome Metagenomics
4.2 years ago by serene.s • 0
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0
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1.8k
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Comment: Comment: Maxbin2 usage for paired end reads
4.3 years ago by serene.s • 0
0
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1
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1.0k
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Rarefy metagenomic adatasets for taxonomic profiling using MetaPhlAn3
metagenomics Rarefy MetaPhaln3 Genomics
updated 4.3 years ago by 3.9k • written 4.3 years ago by • 0
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0
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7.2k
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Comment: Comment: Shotgun rarefactions - metagenomics (microbiome), MetaPhlAn2
4.3 years ago by serene.s • 0
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0
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3.1k
views
Answer: Answer: What are the input files for lwaldron / metaphlanToPhyloseq.R ?
4.3 years ago by serene.s • 0
0
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1
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1.5k
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import metaphlan3 output to Phyloseq
Phyloseq metagenomics MetaPhaln3 Genomics
updated 4.3 years ago by 3.4k • written 4.3 years ago by • 0
0
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0
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1.7k
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Comment: Comment: FastQC report of the metagenomic data
4.3 years ago by serene.s • 0
1
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2
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1.7k
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FastQC report of the metagenomic data
Metagenomics Microbiome WholeShotgunMetagenome FastQC Data-Analysis
4.3 years ago by serene.s • 0
0
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1
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1.2k
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Comment: Comment: top 25 species from all sample datasets
4.4 years ago by serene.s • 0
0
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3
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1.2k
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top 25 species from all sample datasets
Metagenomics Data-Analysis WholeShotgunMetagenome Microbiome
updated 4.4 years ago by ★ 1.7k • written 4.4 years ago by • 0
1
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1
reply
1.4k
views
MEGAN6 Ultimate Edition
Metagenomics MEGAN6
updated 4.4 years ago by 20 • written 4.4 years ago by • 0
0
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1
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5.5k
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Comment: Comment: Parsing a Megan (RMA) File
4.5 years ago by serene.s • 0
0
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0
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1.5k
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Comment: Comment: extract pathogens from metaphlan3 results
4.5 years ago by serene.s • 0
0
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2
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1.5k
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extract pathogens from metaphlan3 results
analysis MetaPhlAn3 Metagenome genomics
4.5 years ago by serene.s • 0
0
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0
replies
1.7k
views
Comment: Comment: How does e value for diamond blastx affects the result
4.5 years ago by serene.s • 0
2
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2
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1.7k
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How does e value for diamond blastx affects the result
analysis metagenomics genomics data
4.5 years ago by serene.s • 0
0
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0
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2.7k
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Comment: Comment: normalize different size fastq files
4.5 years ago by serene.s • 0
0
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0
replies
2.7k
views
Comment: Comment: normalize different size fastq files
4.5 years ago by serene.s • 0
3
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5
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2.7k
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normalize different size fastq files
metagenome data genomics normalization
4.5 years ago by serene.s • 0
0
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0
replies
669
views
Tool for pathogen Detection from metagenome
metagenome genomics
updated 2.3 years ago by 45k • written 4.5 years ago by • 0
0
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0
replies
690
views
Taxonomic Bar Plots for too many values
taxonomy
updated 2.8 years ago by 45k • written 4.5 years ago by • 0
3
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4
replies
2.6k
views
paired end metagenomics analysis
sequence genome alignment metagenome shotgun
updated 4.5 years ago by 21k • written 4.8 years ago by • 0
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