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questions
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378
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Reteroviruses in shotgun metgaenome data
genomics
Metagenomics
Microbial
Viruses
RNA-Viruses
11 months ago by
serene.s
• 0
0
votes
2
replies
669
views
Metagenome Assembly
taxonomy
Assembly
Binning
Metagenomics
21 months ago by
serene.s
• 0
0
votes
2
replies
533
views
extract 16sRNA genes from assembled contigs
Functional
Binning
Annotation
Assemly
Metageenomics
22 months ago by
serene.s
• 0
1
vote
1
reply
909
views
metagenome binning using MaxBin2 for each dataset
Metagenome
Binning
MaxBin
updated 22 months ago by
andres.firrincieli
3.6k • written 22 months ago by
serene.s
• 0
1
vote
1
reply
1.5k
views
kraken2 paired end reads not processing
metagenomics
kraken2
updated 23 months ago by
shenwei356
8.4k • written 23 months ago by
serene.s
• 0
0
votes
1
reply
506
views
functional annotation of metagenomic contigs
Assembly
Functions
Metageenomics
taxonomy
Annotation
updated 24 months ago by
lieven.sterck
15k • written 24 months ago by
serene.s
• 0
3
votes
6
replies
1.2k
views
assign taxonomy to bins
Metageenomics
taxonomy
Binning
updated 2.0 years ago by
andres.firrincieli
3.6k • written 2.0 years ago by
serene.s
• 0
0
votes
0
replies
337
views
How to determine the relative abundance
Abundance
Relative
Genomics
Metagenomics
2.1 years ago by
serene.s
• 0
0
votes
3
replies
2.1k
views
Average Read length
NGS
genomics
Metagenomics
Reads
updated 2.4 years ago by
colindaven
6.4k • written 2.4 years ago by
serene.s
• 0
2
votes
2
replies
851
views
Subsampling metagenomics reads via reformat.sh
NGS
genomics
Metagenomics
Reads
2.4 years ago by
serene.s
• 0
0
votes
1
reply
656
views
using a singualrity application ARGs-OAP
Data-Analysis
WholeShotgunMetagenome
AMR
Microbiome
Metagenomics
updated 2.8 years ago by
ATpoint
82k • written 2.8 years ago by
serene.s
• 0
0
votes
0
replies
603
views
hclust2.py heatmap in MetaPhlAn3 --ftop features
MetaPhlAn3
Data-Analysis
WholeShotgunMetagenome
Microbiome
Metagenomics
2.8 years ago by
serene.s
• 0
0
votes
1
reply
734
views
Rarefy metagenomic adatasets for taxonomic profiling using MetaPhlAn3
metagenomics
Rarefy
MetaPhaln3
Genomics
updated 2.8 years ago by
andres.firrincieli
3.6k • written 2.8 years ago by
serene.s
• 0
0
votes
1
reply
1.1k
views
import metaphlan3 output to Phyloseq
Phyloseq
metagenomics
MetaPhaln3
Genomics
updated 2.9 years ago by
antonioggsousa
3.2k • written 2.9 years ago by
serene.s
• 0
1
vote
2
replies
1.1k
views
FastQC report of the metagenomic data
Metagenomics
Microbiome
WholeShotgunMetagenome
FastQC
Data-Analysis
2.9 years ago by
serene.s
• 0
0
votes
3
replies
779
views
top 25 species from all sample datasets
Metagenomics
Data-Analysis
WholeShotgunMetagenome
Microbiome
updated 2.9 years ago by
Nitin Narwade
★ 1.6k • written 2.9 years ago by
serene.s
• 0
1
vote
1
reply
991
views
MEGAN6 Ultimate Edition
Metagenomics
MEGAN6
updated 2.9 years ago by
natay
20 • written 2.9 years ago by
serene.s
• 0
0
votes
2
replies
1.2k
views
extract pathogens from metaphlan3 results
analysis
MetaPhlAn3
Metagenome
genomics
3.1 years ago by
serene.s
• 0
2
votes
2
replies
1.3k
views
How does e value for diamond blastx affects the result
analysis
metagenomics
genomics
data
3.1 years ago by
serene.s
• 0
3
votes
5
replies
2.0k
views
normalize different size fastq files
metagenome
data
genomics
normalization
3.1 years ago by
serene.s
• 0
0
votes
0
replies
524
views
Tool for pathogen Detection from metagenome
metagenome
genomics
updated 10 months ago by
Ram
43k • written 3.1 years ago by
serene.s
• 0
0
votes
0
replies
521
views
Taxonomic Bar Plots for too many values
taxonomy
updated 16 months ago by
Ram
43k • written 3.1 years ago by
serene.s
• 0
3
votes
4
replies
1.8k
views
paired end metagenomics analysis
sequence
genome
alignment
metagenome
shotgun
updated 3.1 years ago by
cpad0112
21k • written 3.3 years ago by
serene.s
• 0
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