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BaseRecalibrator takes forever to run. Any suggestions?
gatk whole exome
updated 9 months ago by 101k • written 4.6 years ago by ▴ 230
1
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1
reply
557
views
Seeking a Comprehensive Database for Genetic Background of Common Human Cell Lines
mutations cancer cell-line
updated 17 months ago by 145k • written 17 months ago by ▴ 230
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1
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520
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Extract the mRNA sequences of all the orthologs of a eukaryotic gene
eukaryotic mammal alignment ortholog sequence
updated 2.3 years ago by ▴ 530 • written 2.3 years ago by ▴ 230
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1
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758
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Alzheimer's datasets highlighting role of individual genes
RNA-Seq sequencing data alzheimer's
updated 2.5 years ago by • 0 • written 4.2 years ago by ▴ 230
2
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1
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650
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Answer: A: Peak length for TF motif discovery
3.8 years ago by khorms ▴ 230
2
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0
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5.0k
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Comment: C: PhD in Bioinformatics: to continue, or not to continue? That is the question--
3.8 years ago by khorms ▴ 230
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1
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5.0k
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Comment: C: PhD in Bioinformatics: to continue, or not to continue? That is the question--
3.8 years ago by khorms ▴ 230
2
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0
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1.5k
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Answer: A: Counting intronic or exonic reads for all genes
3.9 years ago by khorms ▴ 230
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0
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2.2k
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Comment: C: Gene set enrichment analysis from ChIP-seq data
3.9 years ago by khorms ▴ 230
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0
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2.2k
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Comment: C: Gene set enrichment analysis from ChIP-seq data
3.9 years ago by khorms ▴ 230
1
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1
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872
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Answer: A: Multi-group DE scRNA-seq comps without replicates
3.9 years ago by khorms ▴ 230
1
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1
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836
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Answer: A: There are any good tutorial or book to help to get some stats in kmer analysis?
3.9 years ago by khorms ▴ 230
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0
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2.8k
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Comment: C: FeatureCounts with scRNA-seq
3.9 years ago by khorms ▴ 230
0
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0
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587
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Standard format for SHAPE RNA reactivity data
SHAPE RNA
3.9 years ago by khorms ▴ 230
1
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1
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1.3k
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Answer: A: Should I do normalization to gene/features or samples?
4.1 years ago by khorms ▴ 230
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0
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1.3k
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Answer: A: Extracting features corresponding to low entropy regions from RNAfold output
4.1 years ago by khorms ▴ 230
0
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3
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5.0k
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getting data from american gut project
human microbiome american gut
updated 2.6 years ago by 44k • written 9.9 years ago by ▴ 230
2
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0
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1.8k
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Answer: A: Syntax for samtools flagstat on multiple .bam files outputting to .txt file
4.2 years ago by khorms ▴ 230
2
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0
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3.3k
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Answer: A: Blood Derived Normal RNA_seq samples TCGA
4.2 years ago by khorms ▴ 230
0
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1
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859
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Answer: A: Test if a list of genes with coordinates are expressed (hisat2 data)
4.2 years ago by khorms ▴ 230
0
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1
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1.2k
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Answer: A: Pysam pileup method gives more columns than expected
4.2 years ago by khorms ▴ 230
0
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1
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4.0k
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Comment: C: computing resources for scRNA-seq analysis
4.2 years ago by khorms ▴ 230
1
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0
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4.6k
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Answer: A: GSVA analysis between Clusters
4.2 years ago by khorms ▴ 230
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0
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1.0k
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Answer: A: Entrez e-utils reference for ensembl ids
4.2 years ago by khorms ▴ 230
3
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1
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3.3k
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Answer: A: How to generate a mouse reference genome in STAR?
4.2 years ago by khorms ▴ 230
0
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1
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1.7k
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Comment: C: Trouble quantifying scRNAseq experiment
4.4 years ago by khorms ▴ 230
0
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0
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961
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Answer: A: 1st-year grad student, plant biology lab, new to bioinformatics -- where to begi
4.4 years ago by khorms ▴ 230
3
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4
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5.5k
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Drugs with unknown mechanism of action
text mining pubmed drugs pharmaceutics
updated 4.4 years ago by ▴ 40 • written 7.8 years ago by ▴ 230
0
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0
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6.4k
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Answer: A: Moving data from Seurat to ScanPy
4.6 years ago by khorms ▴ 230
0
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0
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2.0k
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Comment: C: BaseRecalibrator takes forever to run. Any suggestions?
4.6 years ago by khorms ▴ 230
1
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1
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4.9k
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Comment: C: How to analyze the RNAseq paired samples with DESeq2?
4.6 years ago by khorms ▴ 230
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2
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2.5k
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Visualisation of clusters produced by mothur
mothur clustering visualisation qiime
updated 4.9 years ago by 35k • written 8.2 years ago by ▴ 230
1
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0
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1.3k
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Answer: A: How to identify Transcript Factors (TF) binding to my target sequence
5.0 years ago by khorms ▴ 230
1
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1
reply
1.1k
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"Golden standard" RNA-seq datasets for neurodegenerative diseases
RNA-Seq rna-seq data neuroscience
updated 5.0 years ago by ▴ 10 • written 5.0 years ago by ▴ 230
0
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0
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1.5k
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L1000 Knock-out dataset
LINCS L1000 knockdown
7.5 years ago by khorms ▴ 230
0
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0
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3.4k
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Comment: C: Downloading genes annotations from UCSC Table Browser
7.6 years ago by khorms ▴ 230
0
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1
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2.9k
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Comment: C: How to visualize gene difference with PCA?
7.6 years ago by khorms ▴ 230
0
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0
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39k
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Comment: C: hg38 annotation file (gtf) UCSC format
7.6 years ago by khorms ▴ 230
0
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0
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3.4k
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Comment: C: Downloading genes annotations from UCSC Table Browser
7.6 years ago by khorms ▴ 230
1
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4
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3.4k
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Downloading genes annotations from UCSC Table Browser
UCSC genes transcripts refseq Assembly
7.6 years ago by khorms ▴ 230
0
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0
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5.5k
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Comment: C: Drugs with unknown mechanism of action
7.8 years ago by khorms ▴ 230
0
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0
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1.8k
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Comment: C: Mapping to protein networks
7.9 years ago by khorms ▴ 230
4
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4
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1.8k
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Mapping to protein networks
protein network mapping
updated 7.9 years ago by ▴ 200 • written 7.9 years ago by ▴ 230
2
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3
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6.2k
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How to get the abundance of genes in metagenomes from MG RAST
abundance mg-rast metagenome
updated 19 months ago by 44k • written 9.9 years ago by ▴ 230
0
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1
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2.6k
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Comment: C: How to avoid a phylogenetic bias testing a hypothesis on a big set of bacterial
8.5 years ago by khorms ▴ 230
0
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3
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2.6k
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How to avoid a phylogenetic bias testing a hypothesis on a big set of bacterial genomes
bacteria phylogenetics unifrac genome
updated 8.5 years ago by ★ 1.2k • written 8.5 years ago by ▴ 230
2
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1
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2.5k
views
Answer: Answer: Bioinformatics tool's to Predict regulatory elements / TFBS / miRs BS
updated 3.4 years ago by 44k • written 9.9 years ago by ▴ 230
0
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1
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1.9k
views
Getting upstream of a given gene from a .gbk file
genbank upstream
updated 3.4 years ago by 44k • written 9.9 years ago by ▴ 230
0
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0
replies
2.6k
views
Answer: Answer: Can I download 16s rDNA sequencing results from a database?
updated 2.6 years ago by 44k • written 9.9 years ago by ▴ 230
0
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1
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5.0k
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Comment: C: getting data from american gut project
9.9 years ago by khorms ▴ 230
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