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119
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multi-receptor virtual screening
Docking screening GLIDE virtual
3 months ago by mthm ▴ 50
0
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0
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714
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Comment: Comment: Problems separating and converting molecule files with openbabel
4 months ago by mthm ▴ 50
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0
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818
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Comment: Comment: Indexing human chromosome assembly of GRCh38.p14 using STAR
6 months ago by mthm ▴ 50
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1
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818
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Comment: Comment: Indexing human chromosome assembly of GRCh38.p14 using STAR
6 months ago by mthm ▴ 50
0
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4
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818
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Indexing human chromosome assembly of GRCh38.p14 using STAR
star
6 months ago by mthm ▴ 50
0
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2
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425
views
how to create a loop in R
R offtopic
updated 7 months ago by 43k • written 7 months ago by ▴ 50
0
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1
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3.8k
views
Comment: Comment: how to convert minimap2 generated sam file to bam
14 months ago by mthm ▴ 50
7
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3
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3.8k
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how to convert minimap2 generated sam file to bam
minimap2 sam bam samtools
updated 10 months ago by 43k • written 14 months ago by ▴ 50
7
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4
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2.2k
views
fasta extract using seqkit grep regex pattern
seqkit fasta extract pattern regex
updated 18 months ago by 8.4k • written 18 months ago by ▴ 50
1
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3
replies
655
views
match bin number with the coordinate for each chromosome
chromosome bins coordinates
23 months ago by mthm ▴ 50
1
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0
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655
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Answer: Answer: match bin number with the coordinate for each chromosome
23 months ago by mthm ▴ 50
0
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0
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655
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Comment: Comment: match bin number with the coordinate for each chromosome
23 months ago by mthm ▴ 50
5
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2
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557
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trim fasta header, remove after hash (#)
header fasta hash trim
updated 23 months ago by 21k • written 23 months ago by ▴ 50
0
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0
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5.6k
views
Comment: Comment: R, group data based on names and sum each group
23 months ago by mthm ▴ 50
0
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0
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5.6k
views
Comment: Comment: R, group data based on names and sum each group
23 months ago by mthm ▴ 50
0
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1
reply
5.6k
views
Comment: Comment: R, group data based on names and sum each group
23 months ago by mthm ▴ 50
1
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6
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5.6k
views
R, group data based on names and sum each group
manipulation R data
23 months ago by mthm ▴ 50
4
votes
5
replies
3.5k
views
remove/replace unwanted character from a column in R
gsub R stringr
updated 24 months ago by ★ 2.0k • written 24 months ago by ▴ 50
2
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1
reply
452
views
How to define a column class in R, dataframe
colclasses R dataframe
24 months ago by mthm ▴ 50
0
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0
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2.0k
views
Comment: Comment: masked vs unmasked genome annotation comparison
24 months ago by mthm ▴ 50
0
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1
reply
796
views
Comment: Comment: conditional count of occurrence in R
24 months ago by mthm ▴ 50
4
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4
replies
796
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conditional count of occurrence in R
R occurrence table
updated 23 months ago by 21k • written 24 months ago by ▴ 50
0
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0
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2.0k
views
Comment: Comment: masked vs unmasked genome annotation comparison
24 months ago by mthm ▴ 50
4
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4
replies
2.0k
views
masked vs unmasked genome annotation comparison
annotation masked
24 months ago by mthm ▴ 50
0
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0
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458
views
Comment: Comment: how to extract intergenic regions from BRAKER output?
2.0 years ago by mthm ▴ 50
0
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2
replies
458
views
how to extract intergenic regions from BRAKER output?
intergenic braker annotation
2.0 years ago by mthm ▴ 50
0
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2
replies
1.5k
views
Comment: Comment: how to append numbers to a column using awk and R?
2.0 years ago by mthm ▴ 50
6
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10
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1.5k
views
how to append numbers to a column using awk and R?
append awk R
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 50
11
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4
replies
1.2k
views
seqkit replace multifasta file
seqkit multifasta
updated 2.2 years ago by 8.4k • written 2.2 years ago by ▴ 50
0
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0
replies
2.5k
views
Comment: Comment: how to improve PCA visualization using ggplot?
2.4 years ago by mthm ▴ 50
0
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1
reply
2.5k
views
Comment: Comment: how to improve PCA visualization using ggplot?
2.5 years ago by mthm ▴ 50
6
votes
4
replies
2.5k
views
how to improve PCA visualization using ggplot?
eigenvalue R eigenvector PCA ggplot
2.4 years ago by mthm ▴ 50
0
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0
replies
3.0k
views
Comment: Comment: cannot install package "ggbiplot" on R 4.0
2.5 years ago by mthm ▴ 50
3
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2
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3.0k
views
cannot install package "ggbiplot" on R 4.0
ggbiplot R
updated 2.5 years ago by ★ 2.0k • written 2.5 years ago by ▴ 50
2
votes
1
reply
1.1k
views
mapping long-reads to a reference library
bwa TE repeat pacbio
updated 2.5 years ago by 82k • written 2.5 years ago by ▴ 50
0
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0
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773
views
Comment: Comment: How to get SNPs (variant calling) from .gff or .align file?
2.5 years ago by mthm ▴ 50
0
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2
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773
views
How to get SNPs (variant calling) from .gff or .align file?
gff SNP calling varian RepeatMasker
2.5 years ago by mthm ▴ 50
0
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0
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986
views
Comment: Comment: samtools mpileup fail to create bcf
2.5 years ago by mthm ▴ 50
2
votes
2
replies
986
views
samtools mpileup fail to create bcf
mpileup rfasta samtools
2.5 years ago by mthm ▴ 50
0
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1
reply
1.8k
views
Comment: Comment: Trimmomatic error: cannot execute binary file: Exec format error
2.6 years ago by mthm ▴ 50
3
votes
3
replies
1.8k
views
Trimmomatic error: cannot execute binary file: Exec format error
adapter trimmomatic fastq
updated 2.6 years ago by 100k • written 2.6 years ago by ▴ 50
0
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1
reply
1.5k
views
Comment: Comment: how to replace a list of headers in fasta file that are not in order
2.6 years ago by mthm ▴ 50
0
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1
reply
1.5k
views
Comment: Comment: how to replace a list of headers in fasta file that are not in order
2.6 years ago by mthm ▴ 50
5
votes
6
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1.5k
views
how to replace a list of headers in fasta file that are not in order
fasta reheader
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 50
5
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4
replies
1.3k
views
How to adjust sequence line to 60bp?
alignment bioedit geneious
updated 2.7 years ago by 141k • written 2.7 years ago by ▴ 50
0
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0
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2.7k
views
Comment: Comment: how to keep reads in a fasta file based on a seq id list in R?
2.9 years ago by mthm ▴ 50
0
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0
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2.7k
views
Comment: Comment: how to keep reads in a fasta file based on a seq id list in R?
2.9 years ago by mthm ▴ 50
0
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1
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2.7k
views
Comment: Comment: how to keep reads in a fasta file based on a seq id list in R?
2.9 years ago by mthm ▴ 50
3
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6
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2.7k
views
how to keep reads in a fasta file based on a seq id list in R?
R filter fasta
updated 2.9 years ago by 21k • written 2.9 years ago by ▴ 50
2
votes
2
replies
967
views
how to have aligned region in fasta format using blastn?
blastn fasta
updated 2.9 years ago by 43k • written 3.0 years ago by ▴ 50
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