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393
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how to select SNPs at regular intervals based on their physical positions?
R
3.3 years ago by blacktomato27 ▴ 70
0
votes
2
replies
895
views
how to identify haplotypes and its frequency based SNP genotyping data?
haplotypeestimation snphaplotypes haplotype
updated 3.5 years ago by 88k • written 3.5 years ago by ▴ 70
0
votes
0
replies
627
views
how to impute genetic position of SNPs based on neighboring SNPs genetic positions?
R SNP snp impute
4.2 years ago by blacktomato27 ▴ 70
1
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0
replies
759
views
how to impute or predict parent genotype based on progeny genotypic data?
SNP R snp
updated 4.2 years ago by 20 • written 4.3 years ago by ▴ 70
0
votes
8
replies
9.8k
views
R providing row numbers instead row names with read.csv?
R
updated 4.4 years ago by 12k • written 4.4 years ago by ▴ 70
0
votes
1
reply
837
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how to map every SNP flanking sequences to a reference genome?
SNP alignment sequence blast
updated 4.5 years ago by 20 • written 4.6 years ago by ▴ 70
1
vote
10
replies
1.8k
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how to concetanate column values of a data frame and converting single letters of snp calls to bi allelic in R?
R SNP
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 70
0
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0
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816
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how to convert SNP genotyping data into bigsnpr object in R?
R SNP snp
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 70
0
votes
1
reply
973
views
How to select or filter SNPs or selecting Tag SNPs based on physical position, LD and PIC value in R?
R SNP snp genome
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 70
6
votes
2
replies
26k
views
How to extract rows from data frame with row names in R?
R
updated 5.8 years ago by 12k • written 5.8 years ago by ▴ 70
1
vote
10
replies
13k
views
How to read .Excel files into R using openxlsx package?
R Excel import
updated 6.0 years ago by 12k • written 6.0 years ago by ▴ 70
0
votes
6
replies
1.6k
views
How to handle 30000 SNPs genotyping data of 500 individuals in R?
R SNP
6.2 years ago by blacktomato27 ▴ 70
1
vote
2
replies
2.9k
views
how to convert genetic distance matrix to dataframe and rank genotypes based on distance?
R SNP
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 70
0
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3
replies
1.4k
views
how to select set of representative gentypes (corset) from group of genotypes?
SNP R
6.9 years ago by blacktomato27 ▴ 70
0
votes
1
reply
1.0k
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how to make groups or strucuration of individuals in R?
R
7.0 years ago by blacktomato27 ▴ 70
0
votes
1
reply
1.3k
views
why pvclust is not identifying significant clusters?
R
7.0 years ago by blacktomato27 ▴ 70
0
votes
2
replies
2.1k
views
How to calculate LD values of SNP based on chromosomal positions and their call rate?
SNP snp R
7.0 years ago by blacktomato27 ▴ 70
7
votes
14
replies
4.0k
views
how to make bootstrapped tree in PVCLUST package with SNP genotyping data?
R
7.1 years ago by blacktomato27 ▴ 70
7
votes
19
replies
6.9k
views
how to compare 1st row and 1st column value with rest of the row values in R?
R
7.1 years ago by blacktomato27 ▴ 70
2
votes
3
replies
4.5k
views
How to convert SNP genotyping excel file to .MEGA file format
SNP
updated 7.3 years ago by ▴ 10 • written 8.4 years ago by ▴ 70
0
votes
2
replies
2.0k
views
Minimum Physical Distance And Genetic Distance Required To Select Assay For Genotyping Work
snps
updated 9.3 years ago by 20 • written 10.9 years ago by ▴ 70
0
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3
replies
3.0k
views
how to make separate scatter graphs for separate groups with same format in R?
R
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 70
0
votes
7
replies
3.2k
views
Perl Script To Select Snp Assays
bioperl
11.1 years ago by blacktomato27 ▴ 70
1
vote
2
replies
2.3k
views
Snp Selection For Genotyping
snp
updated 11.2 years ago by ★ 2.6k • written 11.2 years ago by ▴ 70
0
votes
1
reply
2.9k
views
How To Select Snp Based On Their Physical Position, Genetic Position And Chromosome Number
snp genotyping
updated 11.2 years ago by ▴ 80 • written 11.2 years ago by ▴ 70
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