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questions
0
votes
0
replies
274
views
Dexseq non-stranded index error
dexseq
9 months ago by
bart
▴ 50
0
votes
0
replies
345
views
Predict interactions between lncRNAs and other RNA types (mRNAs, miRNAs)
mRNA
miRNA
lncRNA
20 months ago by
bart
▴ 50
0
votes
1
reply
782
views
Error: protect(): protection stack overflow model matrix
model.matrix
updated 20 months ago by
ATpoint
82k • written 20 months ago by
bart
▴ 50
1
vote
9
replies
4.3k
views
Error in cut.default(a, breaks = 100) : 'x' must be numeric in pheatmap
pheatmap
20 months ago by
bart
▴ 50
4
votes
3
replies
862
views
PCA plot interpretation after accounting for batch effects with SVA
SVA
plot
PCA
updated 23 months ago by
LauferVA
4.2k • written 24 months ago by
bart
▴ 50
5
votes
14
replies
2.0k
views
Difference in total gene counts between samples
rna-seq
updated 24 months ago by
swbarnes2
14k • written 2.0 years ago by
bart
▴ 50
1
vote
1
reply
847
views
Set fixed amount of variables to use for lasso regression
learning
lasso
machine
regression
updated 2.0 years ago by
Mensur Dlakic
★ 27k • written 2.0 years ago by
bart
▴ 50
2
votes
3
replies
735
views
Mitochondrial gene expression
RNA-seq
mitochondria
updated 2.3 years ago by
nn
▴ 30 • written 2.3 years ago by
bart
▴ 50
2
votes
1
reply
511
views
RNA transfer between human circulating cells and bacteria or contamination?
cells
RNA
Kraken2
updated 2.3 years ago by
Istvan Albert
100k • written 2.3 years ago by
bart
▴ 50
0
votes
3
replies
962
views
Disease signature based on one of the following: ribosomal RNA, bacterial RNA, mitochondrial RNA
bacterial
mitochondrial
RNA
ribosomal
2.3 years ago by
bart
▴ 50
7
votes
10
replies
2.0k
views
6 follow
Cannot differentiate between groups with heatmap
deseq2
heatmap
updated 2.1 years ago by
ATpoint
82k • written 2.3 years ago by
bart
▴ 50
3
votes
2
replies
3.3k
views
Heatmap deseq2
deseq2
heatmap
2.4 years ago by
bart
▴ 50
4
votes
5
replies
1.5k
views
DESeq2: "model matrix is not full rank"
DESeq2
updated 2.4 years ago by
i.sudbery
19k • written 2.4 years ago by
bart
▴ 50
1
vote
1
reply
638
views
deseq2 NA values in metadata
deseq2
updated 2.4 years ago by
ATpoint
82k • written 2.4 years ago by
bart
▴ 50
3
votes
3
replies
890
views
No differentially expressed genes
DESeq2
lncRNAs
updated 2.4 years ago by
basuanubhav
▴ 140 • written 2.4 years ago by
bart
▴ 50
0
votes
1
reply
732
views
stringtie does not show results of all genes
stringtie
galaxy
2.5 years ago by
bart
▴ 50
2
votes
1
reply
878
views
Differential expression analysis (DEA) of lncRNA
EdgeR
lncRNA
updated 2.5 years ago by
Gordon Smyth
★ 7.2k • written 2.6 years ago by
bart
▴ 50
0
votes
2
replies
854
views
Finding counts of lncRNAs with htseq-count /featurecounts
RNA
lncRNAs
htseq-count
non-coding
2.5 years ago by
bart
▴ 50
2
votes
1
reply
655
views
Select human protein coding transcripts in Diamond
diamond
blastx
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
bart
▴ 50
0
votes
1
reply
846
views
Using dgelist function in EdgeR to calculate RPKM
rpkm
edger
dgelist
updated 2.6 years ago by
Simon Ahn
▴ 10 • written 2.6 years ago by
bart
▴ 50
2
votes
1
reply
624
views
Consensus on poly-a selected lncRNAs for differential expression analysis
lncRNA
updated 2.6 years ago by
Carlo Yague
8.7k • written 2.6 years ago by
bart
▴ 50
3
votes
3
replies
853
views
Importing multiple datasets into one folder
Galaxy
updated 2.6 years ago by
cpad0112
21k • written 2.6 years ago by
bart
▴ 50
2
votes
4
replies
1.3k
views
Finding differentially expressed lncRNA
Feelnc
lncRNA
2.7 years ago by
bart
▴ 50
2
votes
5
replies
2.4k
views
Bioperl SeqIO.pm cannot be found
feelnc
lncRNA
bioperl
2.7 years ago by
bart
▴ 50
0
votes
1
reply
835
views
Finding lncRNA using cufflinks
lncRNA
cuffcompare
cufflinks
updated 2.8 years ago by
Ram
43k • written 2.8 years ago by
bart
▴ 50
2
votes
3
replies
1.1k
views
Cuffmerge running time
Cuffmerge
updated 2.8 years ago by
Tm
★ 1.1k • written 2.8 years ago by
bart
▴ 50
1
vote
5
replies
1.3k
views
RNA-seq of human cells and bacteria
Bacteria
RNA-seq
Human
updated 3.0 years ago by
ATpoint
82k • written 3.0 years ago by
bart
▴ 50
27 results • Page
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