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2.8k
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Comment: C: How to use NCBI Gnomon?
6.0 years ago by xieshaojun0621 ▴ 210
1
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0
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6.8k
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Answer: A: What are the best tools for visualizing DNA methylation result?
6.2 years ago by xieshaojun0621 ▴ 210
1
vote
3
replies
1.9k
views
Algorithms for identification of insertion sites using split reads
split read next generation sequencing data
updated 6.4 years ago by ★ 2.6k • written 8.6 years ago by ▴ 210
7
votes
3
replies
17k
views
Add labels in the annotation bar of pheatmap
pheatmap annotation labels heatmap
updated 6.7 years ago by ▴ 20 • written 6.9 years ago by ▴ 210
0
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0
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1.5k
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Comment: A: Why chromosome coordinates were given for unmapped reads in hisat2?
6.8 years ago by xieshaojun0621 ▴ 210
3
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2
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1.5k
views
Why chromosome coordinates were given for unmapped reads in hisat2?
hisat2 RNA-seq Unmapped alignment
6.8 years ago by xieshaojun0621 ▴ 210
2
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0
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2.5k
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Answer: A: Bioinformatics / Computational Biology PhD
updated 6.8 years ago by 45k • written 9.4 years ago by ▴ 210
0
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1
reply
1.7k
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Differences of taxid and species_taxid in assembly_summary.txt
genome assembly NCBI refseq
7.0 years ago by xieshaojun0621 ▴ 210
3
votes
7
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4.5k
views
Where to download older version of R packages in Bioconductor?
RNA-Seq edgeR 3.12.0
updated 7.6 years ago by ★ 2.9k • written 9.2 years ago by ▴ 210
14
votes
10
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5.1k
views
6 follow
How to define a non differentially expressed gene?
rna-seq DEG non-DEG DESeq2 edgeR
updated 8.3 years ago by ★ 2.6k • written 8.4 years ago by ▴ 210
2
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0
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4.2k
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Answer: A: Integrating DMR data
8.3 years ago by xieshaojun0621 ▴ 210
1
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2
replies
2.2k
views
How to extract all the terms using summary?
clusterProfiler
updated 8.4 years ago by ★ 2.6k • written 8.4 years ago by ▴ 210
4
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1
reply
17k
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Comment: C: Scaling data using Pheatmap
8.4 years ago by xieshaojun0621 ▴ 210
0
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0
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5.1k
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Comment: C: How to define a non differentially expressed gene?
8.4 years ago by xieshaojun0621 ▴ 210
0
votes
1
reply
17k
views
Answer: C: Scaling data using Pheatmap
8.4 years ago by xieshaojun0621 ▴ 210
5
votes
7
replies
12k
views
How to install a specific version of R package in Bioconductor?
RNA-Seq bioconductor R DESeq2 version
updated 8.4 years ago by 22k • written 9.2 years ago by ▴ 210
0
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0
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2.5k
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Comment: C: Co-expression network for two time courses RNA-seq data
8.5 years ago by xieshaojun0621 ▴ 210
1
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2
replies
2.5k
views
Co-expression network for two time courses RNA-seq data
time-course co-expression-network RNA-Seq
updated 2.1 years ago by 45k • written 8.5 years ago by ▴ 210
0
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0
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1.9k
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Comment: C: Algorithms for identification of insertion sites using split reads
8.6 years ago by xieshaojun0621 ▴ 210
1
vote
1
reply
3.4k
views
How to understand the split reads recognized by samblaster
alignment samblaster bwa split read mapping
8.6 years ago by xieshaojun0621 ▴ 210
0
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0
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12k
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Answer: A: What Tools Are Available For Analyzing Bisulfite Data?
8.6 years ago by xieshaojun0621 ▴ 210
1
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0
replies
8.2k
views
Comment: Comment: Why is pre formatted refseq database larger than nt database in blastdb?
updated 3.7 years ago by 45k • written 8.7 years ago by ▴ 210
3
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1
reply
2.4k
views
Sources and effects of intronic reads in ribo-zero (ribosome depleted) RNA-seq data
RNA-Seq ribosome depleted ribo-zero intronic reads
updated 8.7 years ago by 48k • written 8.7 years ago by ▴ 210
0
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0
replies
4.5k
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Comment: C: Where to download older version of R packages in Bioconductor?
9.2 years ago by xieshaojun0621 ▴ 210
0
votes
0
replies
4.5k
views
Comment: C: Where to download older version of R packages in Bioconductor?
9.2 years ago by xieshaojun0621 ▴ 210
0
votes
0
replies
4.5k
views
Comment: C: Where to download older version of R packages in Bioconductor?
9.2 years ago by xieshaojun0621 ▴ 210
0
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1
reply
5.1k
views
Comment: C: Is it possible to extract the reference sequence from the BWA index files?
9.3 years ago by xieshaojun0621 ▴ 210
0
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0
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5.5k
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Answer: Answer: How To Find Clusters Of Small Rna With Interval-Trees, Bx-Python
updated 2.9 years ago by 45k • written 9.7 years ago by ▴ 210
0
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0
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2.8k
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Comment: Comment: Permuation-tail probability (PTP) test for an evolutionary signal
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 210
1
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2
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2.8k
views
Permuation-tail probability (PTP) test for an evolutionary signal
alignment statistics phylogenetics
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 210
0
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0
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39k
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Comment: C: Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs D
10.8 years ago by xieshaojun0621 ▴ 210
2
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0
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19k
views
Comment: Comment: samtools: writing to standard output failed: Broken pipe
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 210
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