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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by Alexander ▴ 220
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2
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2.8k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by Alexander ▴ 220
1
vote
14
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2.8k
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Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
deseq
updated 17 months ago by 22k • written 17 months ago by ▴ 220
0
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2.8k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by Alexander ▴ 220
0
votes
1
reply
2.8k
views
Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by Alexander ▴ 220
2
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0
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543
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What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
19 months ago by Alexander ▴ 220
5
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2
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5.8k
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Biopython error: "ModuleNotFoundError: No module named 'Bio.SubsMat'"
biopython
updated 24 months ago by ▴ 20 • written 2.5 years ago by ▴ 220
3
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5
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3.2k
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News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
2.2 years ago by Alexander ▴ 220
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0
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3.2k
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Answer: Answer: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (C
2.2 years ago by Alexander ▴ 220
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0
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3.2k
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Answer: Answer: (27 July - "DeepLoc") A free webinar on on-going CAFA5 (Critical Assessment of
2.3 years ago by Alexander ▴ 220
0
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0
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3.2k
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Answer: Answer: (14 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional An
2.3 years ago by Alexander ▴ 220
0
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0
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3.2k
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Answer: Answer: (3 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional Ann
2.3 years ago by Alexander ▴ 220
3
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1
reply
2.1k
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Answer: Answer: Tools for sentiment analysis that have been vetted on pubmed abstracts
2.4 years ago by Alexander ▴ 220
1
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1
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1.4k
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Comment: Comment: How to use Cyclone to predict cell cycle from single cell Multiomic data (scRNA
2.4 years ago by Alexander ▴ 220
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0
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1.3k
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Comment: Comment: How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal
2.4 years ago by Alexander ▴ 220
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0
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1.4k
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Comment: Comment: Need help using Biopython
2.4 years ago by Alexander ▴ 220
2
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2
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1.3k
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How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal(blossum62) * length ) ?
protein alignment
2.4 years ago by Alexander ▴ 220
0
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0
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5.4k
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Comment: Comment: Asking for feedback on a Python library for computing alignments
2.4 years ago by Alexander ▴ 220
0
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0
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18k
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Comment: Comment: ChatGPT optimized for bioinformatics questions
2.4 years ago by Alexander ▴ 220
3
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2
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18k
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Answer: Answer: ChatGPT optimized for bioinformatics questions
2.4 years ago by Alexander ▴ 220
0
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0
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5.4k
views
Comment: Comment: Asking for feedback on a Python library for computing alignments
2.4 years ago by Alexander ▴ 220
1
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1
reply
5.4k
views
Comment: Comment: Asking for feedback on a Python library for computing alignments
2.4 years ago by Alexander ▴ 220
0
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1
reply
5.4k
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Comment: Comment: Asking for feedback on a Python library for computing alignments
2.4 years ago by Alexander ▴ 220
2
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0
replies
4.2k
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Comment: Comment: Get relationships and hierarchies for GO terms
2.4 years ago by Alexander ▴ 220
0
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1
reply
6.8k
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Comment: Comment: Getting Pairwise Sequence Alignment Score With Biopython
2.4 years ago by Alexander ▴ 220
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0
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1.8k
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Comment: Comment: What are recommended parameters for the local protein alignment ?
2.4 years ago by Alexander ▴ 220
0
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1
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1.8k
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Comment: Comment: What are recommended parameters for the local protein alignment ?
2.4 years ago by Alexander ▴ 220
0
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4
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1.8k
views
What are recommended parameters for the local protein alignment ?
protein alignment
2.4 years ago by Alexander ▴ 220
0
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1
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3.0k
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Comment: Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
2.4 years ago by Alexander ▴ 220
0
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1
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3.0k
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Comment: Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
2.4 years ago by Alexander ▴ 220
0
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0
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3.0k
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Comment: Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
2.4 years ago by Alexander ▴ 220
2
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7
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3.0k
views
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
protein alignment
updated 2.4 years ago by 4.8k • written 2.4 years ago by ▴ 220
0
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0
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4.1k
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Comment: Comment: The fastest protein sequence aligner available
2.4 years ago by Alexander ▴ 220
0
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0
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831
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What controls splicing to switch from CD45RA to CD45RO isoforms ?
scRNA-seq CD-genes
2.7 years ago by Alexander ▴ 220
2
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1
reply
1.8k
views
Understanding "drop-out" for scRNA-seq data
scRNA-seq
updated 2.7 years ago by ▴ 120 • written 2.7 years ago by ▴ 220
0
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0
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2.7k
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Comment: Comment: What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with cha
2.8 years ago by Alexander ▴ 220
5
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8
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2.7k
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What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with chatGPT with such questions ?
chatGPT phosphorylation
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by ▴ 220
3
votes
2
replies
1.1k
views
Looking for list(s) of human genes which are differentially expressed between male and female (better for hematopoetic progenitor cells)
human genes
updated 2.8 years ago by 90k • written 2.8 years ago by ▴ 220
0
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0
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1.2k
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Comment: Comment: Biological reason for correlation of CD36 with S100A4 , S100A6
2.9 years ago by Alexander ▴ 220
0
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1
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1.2k
views
Biological reason for correlation of CD36 with S100A4 , S100A6
scRNA-seq CD-genes
2.9 years ago by Alexander ▴ 220
0
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1
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721
views
Any biological reason for correlation between CD115-CD88-CD71, and other correlations between CD** proteins ?
scRNA-seq CD-genes
updated 3.1 years ago by ★ 1.9k • written 3.1 years ago by ▴ 220
0
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0
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514
views
Which genes (their RNA transcripts) may influence : CD** genes protein levels ?
scRNA-seq CD-genes
3.1 years ago by Alexander ▴ 220
5
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4
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1.5k
views
Databases with Genes <-> Diseases relations
Cancer Genes
updated 3.1 years ago by ★ 4.4k • written 3.1 years ago by ▴ 220
0
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0
replies
492
views
Interpretation for increase of counts of non-zero values in single cell ATAC-seq samples ?
ATAC-seq scRNA-seq
3.1 years ago by Alexander ▴ 220
0
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0
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1.0k
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Comment: Comment: Predicting celltype from only single cell ATAC Seq analysis
3.1 years ago by Alexander ▴ 220
1
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1
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886
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What can we "see" with single cell ATAC-seq data ? (e.g. cell cycle - possible or not ? )
ATAC-seq
updated 3.1 years ago by 90k • written 3.1 years ago by ▴ 220
1
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0
replies
656
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News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
3.2 years ago by Alexander ▴ 220
1
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0
replies
751
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
3.2 years ago by Alexander ▴ 220
0
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1
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2.9k
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Comment: Comment: Ewing sarcoma "related" genes ?
3.4 years ago by Alexander ▴ 220
3
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10
replies
2.9k
views
Ewing sarcoma "related" genes ?
ewing sarcoma
updated 3.4 years ago by 4.8k • written 3.4 years ago by ▴ 220
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