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2
votes
0
replies
203
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
10 days ago by
Alexander
▴ 220
5
votes
2
replies
2.9k
views
Biopython error: "ModuleNotFoundError: No module named 'Bio.SubsMat'"
biopython
updated 5 months ago by
IkramInf
▴ 20 • written 11 months ago by
Alexander
▴ 220
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
8 months ago by
Alexander
▴ 220
0
votes
0
replies
2.3k
views
Answer:
Answer: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (C
8 months ago by
Alexander
▴ 220
0
votes
0
replies
2.3k
views
Answer:
Answer: (27 July - "DeepLoc") A free webinar on on-going CAFA5 (Critical Assessment of
9 months ago by
Alexander
▴ 220
0
votes
0
replies
2.3k
views
Answer:
Answer: (14 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional An
9 months ago by
Alexander
▴ 220
0
votes
0
replies
2.3k
views
Answer:
Answer: (3 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional Ann
9 months ago by
Alexander
▴ 220
3
votes
1
reply
776
views
Answer:
Answer: Tools for sentiment analysis that have been vetted on pubmed abstracts
10 months ago by
Alexander
▴ 220
1
vote
1
reply
718
views
Comment:
Comment: How to use Cyclone to predict cell cycle from single cell Multiomic data (scRNA
10 months ago by
Alexander
▴ 220
0
votes
0
replies
782
views
Comment:
Comment: How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal
10 months ago by
Alexander
▴ 220
0
votes
0
replies
712
views
Comment:
Comment: Need help using Biopython
10 months ago by
Alexander
▴ 220
2
votes
2
replies
782
views
How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal(blossum62) * length ) ?
protein
alignment
10 months ago by
Alexander
▴ 220
0
votes
0
replies
3.3k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
10 months ago by
Alexander
▴ 220
0
votes
0
replies
8.8k
views
Comment:
Comment: ChatGPT optimized for bioinformatics questions
10 months ago by
Alexander
▴ 220
3
votes
2
replies
8.8k
views
Answer:
Answer: ChatGPT optimized for bioinformatics questions
10 months ago by
Alexander
▴ 220
0
votes
0
replies
3.3k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
10 months ago by
Alexander
▴ 220
1
vote
1
reply
3.3k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
10 months ago by
Alexander
▴ 220
0
votes
1
reply
3.3k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
10 months ago by
Alexander
▴ 220
2
votes
0
replies
1.8k
views
Comment:
Comment: Get relationships and hierarchies for GO terms
10 months ago by
Alexander
▴ 220
0
votes
1
reply
5.5k
views
Comment:
Comment: Getting Pairwise Sequence Alignment Score With Biopython
10 months ago by
Alexander
▴ 220
0
votes
0
replies
920
views
Comment:
Comment: What are recommended parameters for the local protein alignment ?
10 months ago by
Alexander
▴ 220
0
votes
1
reply
920
views
Comment:
Comment: What are recommended parameters for the local protein alignment ?
10 months ago by
Alexander
▴ 220
0
votes
4
replies
920
views
What are recommended parameters for the local protein alignment ?
protein
alignment
10 months ago by
Alexander
▴ 220
0
votes
1
reply
1.4k
views
Comment:
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
10 months ago by
Alexander
▴ 220
0
votes
1
reply
1.4k
views
Comment:
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
10 months ago by
Alexander
▴ 220
0
votes
0
replies
1.4k
views
Comment:
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
10 months ago by
Alexander
▴ 220
2
votes
7
replies
1.4k
views
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
protein
alignment
updated 10 months ago by
LauferVA
4.2k • written 10 months ago by
Alexander
▴ 220
0
votes
0
replies
2.4k
views
Comment:
Comment: The fastest protein sequence aligner available
10 months ago by
Alexander
▴ 220
0
votes
0
replies
504
views
What controls splicing to switch from CD45RA to CD45RO isoforms ?
scRNA-seq
CD-genes
13 months ago by
Alexander
▴ 220
2
votes
1
reply
565
views
Understanding "drop-out" for scRNA-seq data
scRNA-seq
updated 14 months ago by
zdebruine
▴ 120 • written 14 months ago by
Alexander
▴ 220
0
votes
0
replies
1.7k
views
Comment:
Comment: What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with cha
15 months ago by
Alexander
▴ 220
5
votes
8
replies
1.7k
views
What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with chatGPT with such questions ?
chatGPT
phosphorylation
updated 15 months ago by
harold.smith.tarheel
★ 4.9k • written 15 months ago by
Alexander
▴ 220
3
votes
2
replies
662
views
Looking for list(s) of human genes which are differentially expressed between male and female (better for hematopoetic progenitor cells)
human
genes
updated 15 months ago by
ATpoint
82k • written 15 months ago by
Alexander
▴ 220
0
votes
0
replies
866
views
Comment:
Comment: Biological reason for correlation of CD36 with S100A4 , S100A6
16 months ago by
Alexander
▴ 220
0
votes
1
reply
866
views
Biological reason for correlation of CD36 with S100A4 , S100A6
scRNA-seq
CD-genes
16 months ago by
Alexander
▴ 220
0
votes
1
reply
481
views
Any biological reason for correlation between CD115-CD88-CD71, and other correlations between CD** proteins ?
scRNA-seq
CD-genes
updated 18 months ago by
jv
★ 1.8k • written 18 months ago by
Alexander
▴ 220
0
votes
0
replies
318
views
Which genes (their RNA transcripts) may influence : CD** genes protein levels ?
scRNA-seq
CD-genes
18 months ago by
Alexander
▴ 220
5
votes
4
replies
904
views
Databases with Genes <-> Diseases relations
Cancer
Genes
updated 18 months ago by
cmdcolin
★ 3.8k • written 18 months ago by
Alexander
▴ 220
0
votes
0
replies
306
views
Interpretation for increase of counts of non-zero values in single cell ATAC-seq samples ?
ATAC-seq
scRNA-seq
19 months ago by
Alexander
▴ 220
0
votes
0
replies
527
views
Comment:
Comment: Predicting celltype from only single cell ATAC Seq analysis
19 months ago by
Alexander
▴ 220
1
vote
1
reply
613
views
What can we "see" with single cell ATAC-seq data ? (e.g. cell cycle - possible or not ? )
ATAC-seq
updated 19 months ago by
ATpoint
82k • written 19 months ago by
Alexander
▴ 220
1
vote
0
replies
440
views
News:
Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq
CITE-seq
scRNA-seq
19 months ago by
Alexander
▴ 220
1
vote
0
replies
513
views
News:
Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq
CITE-seq
scRNA-seq
20 months ago by
Alexander
▴ 220
0
votes
1
reply
1.5k
views
Comment:
Comment: Ewing sarcoma "related" genes ?
23 months ago by
Alexander
▴ 220
3
votes
10
replies
1.5k
views
Ewing sarcoma "related" genes ?
ewing
sarcoma
updated 23 months ago by
LauferVA
4.2k • written 23 months ago by
Alexander
▴ 220
0
votes
0
replies
1.5k
views
Comment:
Comment: Ewing sarcoma "related" genes ?
23 months ago by
Alexander
▴ 220
0
votes
0
replies
1.5k
views
Comment:
Comment: Ewing sarcoma "related" genes ?
23 months ago by
Alexander
▴ 220
0
votes
2
replies
1.5k
views
Comment:
Comment: Ewing sarcoma "related" genes ?
23 months ago by
Alexander
▴ 220
0
votes
0
replies
660
views
Comment:
Comment: What is known about mechanisms which switch "fast" cell cycle for ESC to "normal
23 months ago by
Alexander
▴ 220
1
vote
2
replies
660
views
What is known about mechanisms which switch "fast" cell cycle for ESC to "normal" cell cycle for normal cells?
cellcycle
stemcells
23 months ago by
Alexander
▴ 220
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