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4
votes
7
replies
2.9k
views
Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump
updated 8.4 years ago by 105k • written 8.4 years ago by ★ 1.4k
0
votes
1
reply
5.5k
views
Comment: C: How to download raw data in batch from NCBI based on Series Accession number or
8.5 years ago by biolab ★ 1.4k
0
votes
0
replies
5.5k
views
Comment: C: How to download raw data in batch from NCBI based on Series Accession number or
8.5 years ago by biolab ★ 1.4k
0
votes
0
replies
2.4k
views
Comment: C: Removing shorter reads in PE mapping
8.5 years ago by biolab ★ 1.4k
0
votes
0
replies
2.4k
views
Comment: C: Removing shorter reads in PE mapping
8.5 years ago by biolab ★ 1.4k
0
votes
1
reply
2.4k
views
Comment: C: Removing shorter reads in PE mapping
8.5 years ago by biolab ★ 1.4k
0
votes
1
reply
2.4k
views
Comment: C: Removing shorter reads in PE mapping
8.5 years ago by biolab ★ 1.4k
3
votes
8
replies
2.4k
views
Removing shorter reads in PE mapping
mapping
updated 8.5 years ago by 35k • written 8.5 years ago by ★ 1.4k
0
votes
0
replies
1.5k
views
Comment: C: Which tool was used to generate this mapping file?
8.5 years ago by biolab ★ 1.4k
0
votes
1
reply
1.5k
views
Comment: C: Which tool was used to generate this type of mapping file?
8.5 years ago by biolab ★ 1.4k
0
votes
5
replies
1.5k
views
Which tool was used to generate this mapping file?
mapping
8.5 years ago by biolab ★ 1.4k
0
votes
1
reply
3.2k
views
Comment: C: How to embed genome browser in a web site?
8.6 years ago by biolab ★ 1.4k
4
votes
7
replies
3.2k
views
How to embed genome browser in a web site?
genome browser
updated 8.6 years ago by ★ 4.4k • written 8.6 years ago by ★ 1.4k
0
votes
0
replies
3.2k
views
Comment: C: How to embed genome browser in a web site?
8.6 years ago by biolab ★ 1.4k
2
votes
2
replies
3.3k
views
Output unmapped reads to a file when using tophat2
tophat2
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.4k
6
votes
3
replies
4.5k
views
Tophat --max-multihits option
tophat
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.4k
0
votes
0
replies
10.0k
views
Comment: C: Which model to choose in edgeR analysis?
9.3 years ago by biolab ★ 1.4k
0
votes
1
reply
10.0k
views
Comment: C: Which model to choose in edgeR analysis?
9.3 years ago by biolab ★ 1.4k
0
votes
1
reply
10.0k
views
Comment: C: Which model to choose in edgeR analysis?
9.3 years ago by biolab ★ 1.4k
4
votes
7
replies
10.0k
views
Which model to choose in edgeR analysis?
edgeR
updated 9.3 years ago by 8.4k • written 9.3 years ago by ★ 1.4k
19
votes
15
replies
29k
views
6 follow
tophat-cufflinks command pipeline
cufflinks tophat
updated 2.8 years ago by 45k • written 10.9 years ago by ★ 1.4k
8
votes
3
replies
6.3k
views
Arabidopsis GFF files
Arabidopsis gff
updated 3.7 years ago by 45k • written 10.9 years ago by ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: C: How to identify the loci producing differential small RNAs between two samples?
9.4 years ago by biolab ★ 1.4k
4
votes
3
replies
2.2k
views
How to identify the loci producing differential small RNAs between two samples?
small RNAs
9.4 years ago by biolab ★ 1.4k
0
votes
0
replies
2.7k
views
Comment: C: FASTQ file error
9.5 years ago by biolab ★ 1.4k
1
vote
2
replies
2.7k
views
FASTQ file error
fastq
9.5 years ago by biolab ★ 1.4k
0
votes
0
replies
2.1k
views
Comment: C: bowtie1 parameter -k
9.6 years ago by biolab ★ 1.4k
1
vote
2
replies
2.1k
views
bowtie1 parameter -k
bowtie1
updated 9.6 years ago by ★ 2.1k • written 9.6 years ago by ★ 1.4k
0
votes
0
replies
9.8k
views
Comment: C: How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and
9.6 years ago by biolab ★ 1.4k
0
votes
0
replies
3.4k
views
Comment: C: GFOLD value cutoff
9.7 years ago by biolab ★ 1.4k
0
votes
1
reply
3.4k
views
Comment: C: GFOLD value cutoff
9.7 years ago by biolab ★ 1.4k
2
votes
4
replies
5.1k
views
tophat install problem
tophat
updated 3.7 years ago by 45k • written 10.9 years ago by ★ 1.4k
0
votes
0
replies
2.6k
views
Comment: C: Method to identify novel transcript based on strand-specific RNAseq
9.9 years ago by biolab ★ 1.4k
1
vote
2
replies
2.6k
views
Method to identify novel transcript based on strand-specific RNAseq
cufflinks
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.4k
7
votes
5
replies
4.3k
views
question about unstranded RNA-seq
unstranded RNA-seq
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.4k
5
votes
9
replies
6.0k
views
IGV view of bam file
igv
updated 3.2 years ago by 45k • written 9.9 years ago by ★ 1.4k
0
votes
0
replies
6.0k
views
Comment: C: IGV view of bam file
9.9 years ago by biolab ★ 1.4k
0
votes
1
reply
4.0k
views
Comment: C: Is HTseq result based on uniquely mapped reads?
9.9 years ago by biolab ★ 1.4k
2
votes
3
replies
4.0k
views
Is HTseq result based on uniquely mapped reads?
htseq
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.4k
1
vote
0
replies
7.0k
views
Comment: C: How to get fasta sequences based on bt2 index?
10.0 years ago by biolab ★ 1.4k
7
votes
4
replies
7.0k
views
How to get fasta sequences based on bt2 index?
index bowtie2
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.4k
0
votes
0
replies
2.8k
views
Comment: C: tophat-cuffdiff or tophat-cufflinks-cuffmerge-cuffdiff?
10.0 years ago by biolab ★ 1.4k
1
vote
2
replies
2.8k
views
tophat-cuffdiff or tophat-cufflinks-cuffmerge-cuffdiff?
cuffdiff cufflinks
updated 3.4 years ago by 45k • written 10.0 years ago by ★ 1.4k
4
votes
6
replies
8.7k
views
What tools to perform alignment without adding gaps in?
alignment
updated 3.8 years ago by 45k • written 11.0 years ago by ★ 1.4k
0
votes
0
replies
1.5k
views
Problem with using BamView
BamView
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.4k
8
votes
4
replies
9.3k
views
Where to find BLAST+ default parameters?
blast
updated 15 months ago by 11k • written 10.0 years ago by ★ 1.4k
1
vote
1
reply
16k
views
Comment: C: Script To Calculate Dinucleotide Frequency For Many Sequences
10.0 years ago by biolab ★ 1.4k
20
votes
17
replies
9.7k
views
8 follow
Merge Files (Adding File Names To Sequence Names)
perl awk
updated 10.0 years ago by 20 • written 11.9 years ago by ★ 1.4k
8
votes
9
replies
6.5k
views
Why some lines of BAM file do not contain NH tag
bam NH-tag
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.4k
2
votes
7
replies
4.8k
views
Bowtie Assembly Parameters
assembly
updated 10.0 years ago by 20 • written 12.0 years ago by ★ 1.4k
426 results • Page 2 of 9
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