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0
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replies
673
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Comment:
Comment: Quality control on imputed genotypes for GWAS / application of PGS
12 months ago by
loy_loy
▴ 10
1
vote
2
replies
673
views
Quality control on imputed genotypes for GWAS / application of PGS
qc
imputation
plink
regenie
gwas
12 months ago by
loy_loy
▴ 10
0
votes
1
reply
584
views
PLINK - analyzing summary stats
LD
GWAS
PLINK
updated 20 months ago by
Fabio Marroni
★ 3.0k • written 20 months ago by
loy_loy
▴ 10
0
votes
1
reply
464
views
PLINK ped file
ped
GWAS
summarystats
PLINK
map
updated 21 months ago by
Fabio Marroni
★ 3.0k • written 21 months ago by
loy_loy
▴ 10
0
votes
1
reply
882
views
Samtools depth with 0-based BED file
samtools
sam
bam
bed
updated 17 months ago by
Ram
44k • written 2.5 years ago by
loy_loy
▴ 10
0
votes
2
replies
861
views
Ploidy in WGS samples
cancer
WGS
NGS
bam
ploidy
updated 2.7 years ago by
Thind amarinder
▴ 340 • written 2.8 years ago by
loy_loy
▴ 10
0
votes
1
reply
581
views
Annotating a VCF ignoring ALT
vcf
variant-annotation
dbSNP
bcftools
updated 17 months ago by
Ram
44k • written 2.7 years ago by
loy_loy
▴ 10
0
votes
0
replies
924
views
GATK CalculateContamination: Tumor segmentation
WGS
mutect2
tumor
segments
GATK
2.8 years ago by
loy_loy
▴ 10
0
votes
1
reply
1.0k
views
Comment:
Comment: How to align incomplete pairs and singled end reads?
3.1 years ago by
loy_loy
▴ 10
1
vote
1
reply
1.3k
views
Haplotype map Picard CrosscheckFingerprints
crosscheckfingerprints
haplotype
vcf
picard
map
3.1 years ago by
loy_loy
▴ 10
1
vote
0
replies
1.3k
views
Answer:
Answer: Haplotype map Picard CrosscheckFingerprints
3.1 years ago by
loy_loy
▴ 10
1
vote
3
replies
1.0k
views
How to align incomplete pairs and singled end reads?
bwa
bam2fastq
pairedend
singleread
updated 3.1 years ago by
lieven.sterck
15k • written 3.1 years ago by
loy_loy
▴ 10
0
votes
0
replies
1.2k
views
Comment:
Comment: SortSam Error after BWA alignment
3.3 years ago by
loy_loy
▴ 10
0
votes
0
replies
1.2k
views
Comment:
Comment: SortSam Error after BWA alignment
3.3 years ago by
loy_loy
▴ 10
1
vote
3
replies
1.2k
views
SortSam Error after BWA alignment
alignment
mappingquality
picard
sortsam
bwa
3.3 years ago by
loy_loy
▴ 10
2
votes
2
replies
932
views
BWA aln, according to GDC DNA Seq Analysis Pipeline
scores
BWA
quality
GDC
Alignment
updated 3.4 years ago by
Zhenyu Zhang
★ 1.2k • written 3.4 years ago by
loy_loy
▴ 10
0
votes
1
reply
1.0k
views
GDC Client 500 Server Error
TCGA
GDC
error
GDC-client
server
updated 3.4 years ago by
Kevin Blighe
88k • written 3.4 years ago by
loy_loy
▴ 10
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