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172
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Batch effect issue in RNA velocity analysis
RNA-velocity integration
updated 24 days ago by 82k • written 24 days ago by ▴ 100
0
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0
replies
261
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Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
4 weeks ago by sarahmanderni ▴ 100
0
votes
0
replies
261
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Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
4 weeks ago by sarahmanderni ▴ 100
0
votes
3
replies
261
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq duoblet
4 weeks ago by sarahmanderni ▴ 100
0
votes
0
replies
466
views
Comment: Comment: Single cluster spanning in different locations in UMAP in scRNAseq data
5 weeks ago by sarahmanderni ▴ 100
4
votes
3
replies
466
views
Single cluster spanning in different locations in UMAP in scRNAseq data
UMAP scRNAseq
5 weeks ago by sarahmanderni ▴ 100
0
votes
1
reply
378
views
Comment: Comment: scRNAseq normalization
5 weeks ago by sarahmanderni ▴ 100
1
vote
1
reply
207
views
Seurat 5 integration
integration seurat
updated 5 weeks ago by ★ 16k • written 5 weeks ago by ▴ 100
4
votes
5
replies
378
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scRNAseq normalization
scRNA-seq SCT
updated 5 weeks ago by 82k • written 5 weeks ago by ▴ 100
3
votes
3
replies
328
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quality control scRNAseq
scRNAseq qc
updated 6 weeks ago by ★ 1.8k • written 6 weeks ago by ▴ 100
1
vote
1
reply
273
views
T2T chm13 fasta and annotation files
NGS T2T-chm13 reference-genome
updated 9 weeks ago by 4.6k • written 9 weeks ago by ▴ 100
0
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0
replies
302
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Atac-seq shift single-end data
single-end atac-seq
updated 4 months ago by 43k • written 4 months ago by ▴ 100
0
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0
replies
953
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Comment: Comment: scRNA-seq quality control
5 months ago by sarahmanderni ▴ 100
0
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0
replies
953
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Comment: Comment: scRNA-seq quality control
5 months ago by sarahmanderni ▴ 100
0
votes
4
replies
953
views
scRNA-seq quality control
qc scrnaseq
updated 5 months ago by ★ 1.8k • written 5 months ago by ▴ 100
1
vote
0
replies
297
views
Input data matrix from Seurat toolkit analysis for RNA velocity analysis using scvelo
seurat velocity scvelo scrnaseq
6 months ago by sarahmanderni ▴ 100
0
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1
reply
536
views
Comment: Comment: Visualisation of accessible regions in single cell atacseq data
7 months ago by sarahmanderni ▴ 100
5
votes
3
replies
536
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Visualisation of accessible regions in single cell atacseq data
visualization scATAC-seq single-cell
updated 7 months ago by 43k • written 7 months ago by ▴ 100
1
vote
2
replies
1.0k
views
Jupyter notebook installation
Jupyter
updated 4 weeks ago by ▴ 10 • written 8 months ago by ▴ 100
0
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0
replies
1.1k
views
Comment: Comment: New mouse reference genome (GRCm39/mm39)
updated 8 months ago by 43k • written 8 months ago by ▴ 100
0
votes
3
replies
1.1k
views
New mouse reference genome (GRCm39/mm39)
reference-genome mm39
updated 8 months ago by 43k • written 8 months ago by ▴ 100
0
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1
reply
754
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
8 months ago by sarahmanderni ▴ 100
0
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1
reply
754
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
8 months ago by sarahmanderni ▴ 100
0
votes
5
replies
754
views
bamCoverage fails in bam files with large number of small contigs in headers
bamCoverage
updated 8 months ago by 6.4k • written 8 months ago by ▴ 100
0
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1
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1.9k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
3.0 years ago by sarahmanderni ▴ 100
0
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1
reply
1.9k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
3.0 years ago by sarahmanderni ▴ 100
0
votes
1
reply
1.9k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
3.0 years ago by sarahmanderni ▴ 100
9
votes
9
replies
1.9k
views
RNA-seq de novo assembly alignment quality assessment
trinity rnaseq denovo assembly
3.0 years ago by sarahmanderni ▴ 100
0
votes
1
reply
2.9k
views
Microarray batch effect correction
Microarray Batch-effect
updated 7 days ago by 43k • written 6.6 years ago by ▴ 100
0
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1
reply
27k
views
Comment: C: TMM normalization factors in RNA-seq analysis
6.7 years ago by sarahmanderni ▴ 100
0
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0
replies
27k
views
Comment: C: TMM normalization factors in RNA-seq analysis
6.7 years ago by sarahmanderni ▴ 100
0
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0
replies
27k
views
Comment: C: TMM normalization factors in RNA-seq analysis
6.7 years ago by sarahmanderni ▴ 100
11
votes
8
replies
27k
views
TMM normalization factors in RNA-seq analysis
RNA-Seq TMM normalization
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 100
14
votes
11
replies
12k
views
6 follow
Paired-End Bam Files
paired-end bam
updated 8.2 years ago by ★ 9.4k • written 10.2 years ago by ▴ 100
0
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1
reply
1.6k
views
Comment: C: mRNA expression levels association
8.4 years ago by sarahmanderni ▴ 100
3
votes
4
replies
1.6k
views
mRNA expression levels association
RNA-Seq
updated 8.4 years ago by ★ 4.7k • written 8.4 years ago by ▴ 100
6
votes
3
replies
2.0k
views
Borrow Information Between Genes In Rna-Seq Analysis Methods
rna-seq
updated 8.5 years ago by 20 • written 10.1 years ago by ▴ 100
0
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1
reply
3.9k
views
Comment: C: TopHat with older versions of Bowtie
9.8 years ago by sarahmanderni ▴ 100
3
votes
3
replies
3.9k
views
TopHat with older versions of Bowtie
bowtie Tophat
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 100
7
votes
1
reply
8.8k
views
Reference genome for mapping RNA-seq spike-in dataset
RNA-Seq alignment
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 100
1
vote
1
reply
2.2k
views
Sample clustering based on gene expression
cluster gene expression
updated 10.0 years ago by ★ 7.8k • written 10.0 years ago by ▴ 100
1
vote
4
replies
1.9k
views
Retrieving Information From Ensembl Without Knowing The Speices
ensembl
updated 10.1 years ago by 23k • written 10.1 years ago by ▴ 100
0
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1
reply
3.2k
views
Comment: C: Gene-Specific Normalization In Rna-Seq
10.1 years ago by sarahmanderni ▴ 100
0
votes
1
reply
3.2k
views
Comment: C: Gene-Specific Normalization In Rna-Seq
10.1 years ago by sarahmanderni ▴ 100
7
votes
5
replies
3.2k
views
Gene-Specific Normalization In Rna-Seq
normalization rna-seq
updated 10.1 years ago by 104k • written 10.1 years ago by ▴ 100
0
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1
reply
2.0k
views
Comment: C: Borrow Information Between Genes In Rna-Seq Analysis Methods
10.1 years ago by sarahmanderni ▴ 100
0
votes
1
reply
3.4k
views
Comment: C: Detection Of Alignment Algorithm Based On Bam Files
10.1 years ago by sarahmanderni ▴ 100
5
votes
3
replies
3.4k
views
Detection Of Alignment Algorithm Based On Bam Files
alignment bam
updated 10.1 years ago by ▴ 500 • written 10.1 years ago by ▴ 100
0
votes
1
reply
6.0k
views
Comment: C: How To Convert Hgnc Gene Symbols To Gene Full Description?
10.2 years ago by sarahmanderni ▴ 100
4
votes
3
replies
6.0k
views
How To Convert Hgnc Gene Symbols To Gene Full Description?
conversion
updated 10.2 years ago by 49k • written 10.2 years ago by ▴ 100
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