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5
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4
replies
1.0k
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Nanopore data analysis
nanopore
updated 5 months ago by 8.1k • written 5 months ago by ▴ 130
0
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1
reply
1.0k
views
Comment: Comment: Nanopore data analysis
5 months ago by sarahmanderni ▴ 130
0
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1
reply
1.9k
views
Comment: Comment: nanopore unaligned bam files
5 months ago by sarahmanderni ▴ 130
8
votes
5
replies
1.9k
views
nanopore unaligned bam files
nanopore
updated 5 months ago by 154k • written 5 months ago by ▴ 130
0
votes
0
replies
1.2k
views
Comment: Comment: Pseudoreplicate creation from bam files
10 months ago by sarahmanderni ▴ 130
0
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1
reply
1.2k
views
Comment: Comment: Pseudoreplicate creation from bam files
10 months ago by sarahmanderni ▴ 130
2
votes
4
replies
1.2k
views
Pseudoreplicate creation from bam files
chipseq IDR shuffle_bam
10 months ago by sarahmanderni ▴ 130
0
votes
2
replies
1.2k
views
Atac-seq shift single-end data
single-end atac-seq
updated 16 months ago by 90k • written 23 months ago by ▴ 130
0
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0
replies
607
views
ATAC-seq +4 -5 shift in single-end setting before motif analysis
single-end atacseq
16 months ago by sarahmanderni ▴ 130
0
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0
replies
1.5k
views
Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
16 months ago by sarahmanderni ▴ 130
0
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1
reply
1.5k
views
Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
17 months ago by sarahmanderni ▴ 130
5
votes
4
replies
1.5k
views
Statistical test to compare cell type proportions in scrnaseq data
compositional-analysis scRNA-seq
16 months ago by sarahmanderni ▴ 130
1
vote
1
reply
1.5k
views
Comment: Comment: PCR duplicate removal in single-end atac-seq data
17 months ago by sarahmanderni ▴ 130
4
votes
3
replies
1.5k
views
PCR duplicate removal in single-end atac-seq data
ATAC-seq pcr-duplicate
updated 17 months ago by 90k • written 17 months ago by ▴ 130
1
vote
1
reply
995
views
Batch effect issue in RNA velocity analysis
RNA-velocity integration
updated 19 months ago by 90k • written 19 months ago by ▴ 130
0
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0
replies
890
views
Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
19 months ago by sarahmanderni ▴ 130
0
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0
replies
890
views
Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
19 months ago by sarahmanderni ▴ 130
0
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3
replies
890
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq duoblet
19 months ago by sarahmanderni ▴ 130
0
votes
0
replies
4.1k
views
Comment: Comment: Single cluster spanning in different locations in UMAP in scRNAseq data
20 months ago by sarahmanderni ▴ 130
7
votes
3
replies
4.1k
views
Single cluster spanning in different locations in UMAP in scRNAseq data
UMAP scRNAseq
20 months ago by sarahmanderni ▴ 130
0
votes
1
reply
1.4k
views
Comment: Comment: scRNAseq normalization
20 months ago by sarahmanderni ▴ 130
1
vote
1
reply
757
views
Seurat 5 integration
integration seurat
updated 20 months ago by ★ 19k • written 20 months ago by ▴ 130
4
votes
5
replies
1.4k
views
scRNAseq normalization
scRNA-seq SCT
updated 20 months ago by 90k • written 20 months ago by ▴ 130
3
votes
3
replies
1.0k
views
quality control scRNAseq
scRNAseq qc
updated 20 months ago by ★ 1.9k • written 20 months ago by ▴ 130
1
vote
1
reply
2.5k
views
T2T chm13 fasta and annotation files
NGS T2T-chm13 reference-genome
updated 21 months ago by 4.7k • written 21 months ago by ▴ 130
0
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0
replies
2.3k
views
Comment: Comment: scRNA-seq quality control
24 months ago by sarahmanderni ▴ 130
0
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0
replies
2.3k
views
Comment: Comment: scRNA-seq quality control
24 months ago by sarahmanderni ▴ 130
1
vote
4
replies
2.3k
views
scRNA-seq quality control
qc scrnaseq
updated 24 months ago by ★ 1.9k • written 2.0 years ago by ▴ 130
1
vote
0
replies
691
views
Input data matrix from Seurat toolkit analysis for RNA velocity analysis using scvelo
seurat velocity scvelo scrnaseq
2.0 years ago by sarahmanderni ▴ 130
0
votes
1
reply
1.3k
views
Comment: Comment: Visualisation of accessible regions in single cell atacseq data
2.2 years ago by sarahmanderni ▴ 130
5
votes
3
replies
1.3k
views
Visualisation of accessible regions in single cell atacseq data
visualization scATAC-seq single-cell
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 130
1
vote
2
replies
2.9k
views
Jupyter notebook installation
Jupyter
updated 19 months ago by ▴ 10 • written 2.2 years ago by ▴ 130
0
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0
replies
4.6k
views
Comment: Comment: New mouse reference genome (GRCm39/mm39)
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 130
0
votes
3
replies
4.6k
views
New mouse reference genome (GRCm39/mm39)
reference-genome mm39
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 130
0
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1
reply
1.7k
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
2.3 years ago by sarahmanderni ▴ 130
0
votes
1
reply
1.7k
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
2.3 years ago by sarahmanderni ▴ 130
0
votes
5
replies
1.7k
views
bamCoverage fails in bam files with large number of small contigs in headers
bamCoverage
updated 2.3 years ago by 8.1k • written 2.3 years ago by ▴ 130
0
votes
1
reply
3.3k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
4.5 years ago by sarahmanderni ▴ 130
0
votes
1
reply
3.3k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
4.5 years ago by sarahmanderni ▴ 130
0
votes
1
reply
3.3k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
4.5 years ago by sarahmanderni ▴ 130
9
votes
9
replies
3.3k
views
RNA-seq de novo assembly alignment quality assessment
trinity rnaseq denovo assembly
4.5 years ago by sarahmanderni ▴ 130
0
votes
1
reply
3.3k
views
Microarray batch effect correction
Microarray Batch-effect
updated 19 months ago by 45k • written 8.2 years ago by ▴ 130
0
votes
1
reply
30k
views
Comment: C: TMM normalization factors in RNA-seq analysis
8.2 years ago by sarahmanderni ▴ 130
0
votes
0
replies
30k
views
Comment: C: TMM normalization factors in RNA-seq analysis
8.2 years ago by sarahmanderni ▴ 130
0
votes
0
replies
30k
views
Comment: C: TMM normalization factors in RNA-seq analysis
8.2 years ago by sarahmanderni ▴ 130
11
votes
8
replies
30k
views
TMM normalization factors in RNA-seq analysis
RNA-Seq TMM normalization
updated 8.2 years ago by 35k • written 8.2 years ago by ▴ 130
14
votes
11
replies
13k
views
6 follow
Paired-End Bam Files
paired-end bam
updated 9.8 years ago by ★ 9.6k • written 11.8 years ago by ▴ 130
0
votes
1
reply
2.3k
views
Comment: C: mRNA expression levels association
10.0 years ago by sarahmanderni ▴ 130
3
votes
4
replies
2.3k
views
mRNA expression levels association
RNA-Seq
updated 10.0 years ago by ★ 4.8k • written 10.0 years ago by ▴ 130
6
votes
3
replies
2.5k
views
Borrow Information Between Genes In Rna-Seq Analysis Methods
rna-seq
updated 10.1 years ago by 20 • written 11.7 years ago by ▴ 130
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