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Comment: Comment: Searching for RNA-seq melanoma samples in TCGA or cBioPortal
3.2 years ago by AlexStar ▴ 200
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1.2k
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Comment: Comment: Error with TCGA package - TCGAbiolinks
3.2 years ago by AlexStar ▴ 200
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2
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1.2k
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Error with TCGA package - TCGAbiolinks
TCGA r cancer
3.2 years ago by AlexStar ▴ 200
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6
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4.1k
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ESTIMATE tumor purity
purity r cancer
3.2 years ago by AlexStar ▴ 200
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0
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4.1k
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Answer: Answer: ESTIMATE tumor purity
3.2 years ago by AlexStar ▴ 200
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3
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1.4k
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Searching for RNA-seq melanoma samples in TCGA or cBioPortal
TCGA r cBioPortal cancer
updated 3.2 years ago by ▴ 130 • written 3.2 years ago by ▴ 200
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0
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4.1k
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Comment: Comment: ESTIMATE tumor purity
3.3 years ago by AlexStar ▴ 200
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4.1k
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Comment: Comment: ESTIMATE tumor purity
3.3 years ago by AlexStar ▴ 200
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1
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4.1k
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Comment: Comment: ESTIMATE tumor purity
3.3 years ago by AlexStar ▴ 200
0
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1
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786
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From counts to TPM code verification
TPM normalization r
updated 3.3 years ago by 89k • written 3.3 years ago by ▴ 200
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1
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2.0k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
3.3 years ago by AlexStar ▴ 200
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0
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2.0k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
3.3 years ago by AlexStar ▴ 200
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2
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2.0k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
3.3 years ago by AlexStar ▴ 200
0
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7
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2.0k
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A check over my code using Limma DE, starting from normalized data
limma r
updated 3.0 years ago by ★ 8.3k • written 3.3 years ago by ▴ 200
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1
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1.8k
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Comment: Comment: Cellular deconvolution does not work without batch effect correction
3.5 years ago by AlexStar ▴ 200
1
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4
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1.8k
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Cellular deconvolution does not work without batch effect correction
deconvolution batch-effect r
updated 13 months ago by 45k • written 3.5 years ago by ▴ 200
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1
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1.6k
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Comment: Comment: Error: Application depends on package "rlang" but it is not installed
3.5 years ago by AlexStar ▴ 200
0
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3
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1.6k
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Error: Application depends on package "rlang" but it is not installed
shiny R
updated 3.5 years ago by 27k • written 3.5 years ago by ▴ 200
0
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0
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565
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How to check if genes are important in cancer, using depmap or cBioPortal?
cBioPortal r depmap
3.5 years ago by AlexStar ▴ 200
0
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0
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900
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Comment: Comment: associate EBV to cancer
3.5 years ago by AlexStar ▴ 200
0
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0
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1.1k
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Comment: Comment: low counts in DESeq2
3.5 years ago by AlexStar ▴ 200
0
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2
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900
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associate EBV to cancer
EBV r depmap
3.5 years ago by AlexStar ▴ 200
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2
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1.1k
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low counts in DESeq2
DESeq2 r
3.5 years ago by AlexStar ▴ 200
0
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1
reply
1.3k
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Comment: Comment: How to deal with batch effects of multiple datasets?
3.5 years ago by AlexStar ▴ 200
0
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1
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1.3k
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Comment: Comment: How to deal with batch effects of multiple datasets?
3.5 years ago by AlexStar ▴ 200
0
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5
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1.3k
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How to deal with batch effects of multiple datasets?
DESeq2 r
updated 3.5 years ago by 15k • written 3.5 years ago by ▴ 200
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0
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453
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Primary and Metastatic genes
cancer DESeq2
3.5 years ago by AlexStar ▴ 200
1
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7
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2.8k
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Linear regression on RNA-seq data
r regression
3.6 years ago by AlexStar ▴ 200
0
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0
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2.8k
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Comment: Comment: Linear regression on RNA-seq data
3.6 years ago by AlexStar ▴ 200
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0
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2.8k
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Comment: Comment: Linear regression on RNA-seq data
3.6 years ago by AlexStar ▴ 200
0
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0
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2.8k
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Comment: Comment: Linear regression on RNA-seq data
3.6 years ago by AlexStar ▴ 200
0
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0
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541
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Contrast for LIMMA
r limma
3.6 years ago by AlexStar ▴ 200
0
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0
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7.1k
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Comment: Comment: limma - voom with TPM data
3.6 years ago by AlexStar ▴ 200
0
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1
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7.1k
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Comment: Comment: limma - voom with TPM data
3.6 years ago by AlexStar ▴ 200
0
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1
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7.1k
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Comment: Comment: limma - voom with TPM data
3.6 years ago by AlexStar ▴ 200
1
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1
reply
7.1k
views
Comment: Comment: limma - voom with TPM data
3.6 years ago by AlexStar ▴ 200
3
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8
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7.1k
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limma - voom with TPM data
r limma
3.6 years ago by AlexStar ▴ 200
0
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1
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4.0k
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Comment: Comment: DESeq2 shrinking log fold-change
3.6 years ago by AlexStar ▴ 200
0
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1
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4.0k
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Comment: Comment: DESeq2 shrinking log fold-change
3.6 years ago by AlexStar ▴ 200
0
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5
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4.0k
views
DESeq2 shrinking log fold-change
DESeq2 r
updated 3.6 years ago by ★ 2.6k • written 3.6 years ago by ▴ 200
3
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4
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3.2k
views
heatmaps for limma-voom DE genes
heatmap r limma
updated 3.6 years ago by 89k • written 3.6 years ago by ▴ 200
0
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1
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3.2k
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Comment: Comment: heatmaps for limma-voom DE genes
3.6 years ago by AlexStar ▴ 200
0
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0
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435
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t-SNE for multiple datasets in R
t-sne r
3.6 years ago by AlexStar ▴ 200
0
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0
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2.0k
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Comment: Comment: How to get gene lengths ?
3.7 years ago by AlexStar ▴ 200
0
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2
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2.0k
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How to get gene lengths ?
tpm r RNA-seq
3.7 years ago by AlexStar ▴ 200
0
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1
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3.8k
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How to read a tar file, filled with txt.gz files and CEL.gz
tar R 7-Zip
updated 3.7 years ago by 89k • written 3.7 years ago by ▴ 200
2
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1
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1.2k
views
How do I download data from the EGA ?
data dataset EGA. r
updated 3.7 years ago by 153k • written 3.7 years ago by ▴ 200
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2
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1.6k
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Error in read.table(file = file, header = header, sep = sep, quote = quote, : duplicate 'row.names' are not allowed
URL R
updated 2.4 years ago by 45k • written 3.9 years ago by ▴ 200
148 results • Page 3 of 3
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