1 day ago by
Alison Halpin
•
0
0
votes
0
replies
101
views
0
votes
0
replies
130
views
2 days ago by
nmccool
•
0
0
votes
0
replies
79
views
3 days ago by
Maciej
•
0
0
votes
0
replies
96
views
3 days ago by
Maciej
•
0
1
vote
0
replies
283
views
6 days ago by
patricia.froemling
▴
10
0
votes
0
replies
301
views
0
votes
0
replies
232
views
2
votes
1
reply
488
views
updated 3 days ago by
Ram
36k
•
written 12 weeks ago by
Giulia.cosenza
▴
60
0
votes
0
replies
242
views
1
vote
4
replies
463
views
19
votes
16
replies
2.9k
views
2
votes
0
replies
1.5k
views
1
vote
0
replies
1.7k
views
Recent Votes
Recent Locations •
All
United Kingdom, 7 minutes ago
United States, 8 minutes ago
Cambridge, MA, 13 minutes ago
United States, 16 minutes ago
Turkey, 17 minutes ago
Glasgow, Scotland, 23 minutes ago
USA, 28 minutes ago
Recent Awards •
All
Scholar to
Marco Pannone
▴
290
Popular Question to
hasani.iut6
▴
70
Popular Question to
el97004
▴
50
Scholar to
Pierre Lindenbaum
146k
Popular Question to
pifferdavide
▴
100
Popular Question to
Zahra
▴
50
Recent Replies
Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
by
chrchang523
9.3k
If 1kgtot.bim contains doubled IDs (e.g. "HG00096 HG00096", you need to provide a doubled ID to `--indv`. The log file shows that your scr…
Answer: ESTIMATE tumor purity
by
JACKY
▴
10
Just in case anyone faces this problem in the future, here is the link for the updated `estimate package` on github:
https://github.com/…
Answer: Exctract unmapped reads from BLAST
by
GenoMax
117k
> Is there a way to tell blast to output the unmapped reads into a
> separate file?
No there is not. You will need to use `-outfmt 7` whe…
Comment: Resfams Database usage
by
Neel
▴
10
Hi, i have annotated genome by prokka and o want to search amr agaisnt resfams could you please tell me how to do it steps by steps.
Comment: Exctract unmapped reads from BLAST
by
Pierre Lindenbaum
146k
those are two distinct commands https://linux.die.net/man/1/comm and https://linux.die.net/man/1/join
extract the names of your queries, s…
Comment: Exctract unmapped reads from BLAST
by
Pilar
•
0
Thanks for answering :),
sorry, I'm new at this. These are commands I should use when I launch Blast in terminal?
Comment: Exctract unmapped reads from BLAST
by
Pierre Lindenbaum
146k
have a look at `comm` or `join`.
Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
by
pifferdavide
▴
100
Sorry I forgot to mention I used it in this loop, which worked with another plink file, but not with this 1KG file.
for popfile in $(l…
Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
by
chrchang523
9.3k
`--indv` takes a single ID, not a filename. So `--indv IDlist.txt` shouldn't work.
Answer: Quast Ouput
by
Ying
•
0
The "# contigs 47484" is based on contig of size >= 500 bp (see the first line of your screenshot). The "# contigs (>= 0 bp)" is the raw nu…
Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
by
Mensur Dlakic
★
19k
Not sure why: 1) you are splitting reads; 2) you are fixing reads when they seem fine. I suggest something like this instead after `prefetc…
Comment: Quick way to get a field such as QNAME from the last read in a bam file?
by
kalavattam
▴
70
Thank you. Do you know of any strategies for non-coordinated-sorted bam files?
Comment: analyzing a single cell and searching for a specific gene using single cell data
by
jared.andrews07
★
13k
@rpolicastro gave you several helpful links for using the h5ad file, in addition to how to explore and plot data. The links in my answer al…
Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
by
pifferdavide
▴
100
I was able to run the --indv command successfully on a file with a bed file by simply listing the IDs in single column.
However, with anoth…
Answer: Get nucleotide sequence of assembled RNA transcripts
by
tomas4482
▴
140
1. design a RNA-seq experiment specifically seuqencing non-coding RNA/circRNA sequencing.
2. subset to interested region -> extract chi…
Traffic: 930 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6