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10 results • Page
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Job:
CTO/founding engineer role at Voyant Bio
engineer
3 days ago by
Assaf
• 0
0
votes
0
replies
133
views
Job:
Ensembl Plants Senior Bioinformatician
ebi
embl
genomics
ensembl
6 days ago by
Ben_Ensembl
★ 2.4k
0
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247
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Job:
Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes
DevOps
executor
AWS
Snakemake
updated 11 days ago by
Michael
54k • written 11 days ago by
jonrkarr
▴ 100
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196
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Job:
Ensembl Outreach Project Leader
ebi
embl
genomics
ensembl
6 days ago by
Ben_Ensembl
★ 2.4k
0
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197
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Job:
Bioinformatics PhD position in Aarhus, Denmark
PhD
Genomics
Cancer
updated 17 days ago by
Ram
43k • written 19 days ago by
besen
• 0
0
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277
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Job:
PhD in bioinformatics / computational biology
NGS
Omics
Evolution
Aging
20 days ago by
Arne.Sahm
• 0
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1
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2.4k
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Job:
Full Stack Web Developer - Cambridge, UK
JavaScript
Python
Visualisation
written 8.4 years ago by
Richard Smith
▴ 400
2
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1
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621
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Job:
Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
23 days ago by
Shicheng Guo
★ 9.4k
0
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0
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253
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Job:
Bioinformatics/Data Science postdoc position in Aarhus, Denmark
data-science
genomics
postdoc
updated 23 days ago by
Ram
43k • written 6 weeks ago by
besen
• 0
0
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0
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2.0k
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Job:
Bioinformatics Research Postdoc
RNA-Seq
genome
updated 17 days ago by
Ram
43k • written 8.2 years ago by
ggrant543
• 0
10 results • Page
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Recent Votes
Comment: NGS forensics: how to know if data is fabricated
Comment: How many reads for WGS Sequencing?
Comment: How many reads for WGS Sequencing?
Comment: How many reads for WGS Sequencing?
Comment: How many reads for WGS Sequencing?
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
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Recent Replies
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 540
Working on it - it's actually a bit difficult. Low coverage of ribosomal proteins. Low coverage of housekeeping genes ...I'm trying to find…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 540
I'm a bit against pubpeer - have you ever posted there? My gripe with them is that the posts are heavily moderated and EDITED to the point…
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
Thanks Mensur! I'd add that in 9 out of 10 cases, you won't receive a reply to a request for raw data. That's just how scientists are, does…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
I had downloaded the two files in a similar manner actually.
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
ok, i'll try to use fastp. I have only used trimmomatic and cutadapt till now and they dont identify on its own. Except the graph in fastqc…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
got it! even if i'm doing the assembly for paired end with both the files do i have set the threshold to 1000bp ?
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
Gordon Smyth
★ 7.0k
> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
Answer: Finding batch and outlayers
by
Tigran
• 0
![enter image description here][1] [1]: /media/images/aa60b9ef-b08c-4093-9f0d-fb656a5c
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴ 540
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
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