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Recent Replies
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ATpoint
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You have RNA-seq or capture? I do not follow.
Comment: Normalization of RNA captureSeq data (<20 genes captured)
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Thanks for the comment ATpoint.
I was just wondering if we could use the information/counts that we get on other genes (not part of the t…
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run a `system()` command from R ?
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Check how many variants you have without filtering for MAF, maybe use a MAF of 0.01? You could try the --impute-sex **ycount** or **y-only*…
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> What would you do if you wanted to compare differential expression of a gene across tissues from RNA-seq data?
Get a dataset that has ev…
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Thanks @Pierre this is great to know, although it doesn't solve my issue of this being R-self-contained. rsamtools doesn't seem to carry fu…
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Ok, thanks for letting me know. What would you do if you wanted to compare differential expression of a gene across tissues from RNA-seq da…
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To put it more simply with another example, I try to display every possible order for every phyla founded in my run but I don't find the l…
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Thank you for your answer but unfortunately I tried it and it makes the same kind of ouptut as mine, with multtiple new (false) lines (spl…
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What is the question exactly? With only 20 genes you basically **must** use the spike-ins as that few genes do not really allow to normaliz…
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Since all your sequences have the same length (say M) and you are only looking concerned with hamming distance you can encode your sequence…
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ChatGPT says
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using wikidata: https://query.wikidata.org/sparql?query=%0ASELECT%20%3Fitem%20%3FitemLabel%20%3FitemDescription%20%3Fprevalence%20%3Fdoid%0…
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