Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
172 results • Page
4 of 4
Sort: replies
Rank
Views
Votes
Replies
0
votes
0
replies
59
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 6 hours ago by
Ram
43k • written 7 hours ago by
MICOS
• 0
0
votes
0
replies
51
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 6 hours ago by
Ram
43k • written 6 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
41
views
Normalizing AMR gene count data
abundance
RGI
updated 6 hours ago by
Ram
43k • written 6 hours ago by
arshad1292
▴ 100
0
votes
0
replies
124
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 4 days ago by
Ram
43k • written 4 days ago by
Oscar
▴ 10
0
votes
0
replies
98
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
4 days ago by
meck
• 0
0
votes
0
replies
106
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
5 days ago by
VITALA
• 0
0
votes
0
replies
144
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
5 days ago by
O.rka
▴ 710
0
votes
0
replies
164
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 6 days ago by
Ram
43k • written 6 days ago by
Chakri
• 0
0
votes
0
replies
126
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 6 days ago by
Ram
43k • written 6 days ago by
Alexandros
• 0
0
votes
0
replies
52
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
4 hours ago by
Biostar
2.7k
0
votes
0
replies
38
views
vdjtools
vdjtools
4 hours ago by
yueli7
▴ 250
0
votes
0
replies
27
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
3 hours ago by
Javier
• 0
0
votes
0
replies
32
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
3 hours ago by
MAPK2
▴ 40
0
votes
0
replies
121
views
Homer motif analysis
Homer
2 days ago by
daffodil
▴ 10
0
votes
0
replies
35
views
Cox Model with interaction item interpretation
Cox
3 hours ago by
Bine
▴ 60
0
votes
0
replies
132
views
Empty table plot using plotGseaTable()
FGSEA
2 days ago by
Chris
▴ 260
0
votes
0
replies
137
views
barcode of TCR-sequencing
barcode
6 days ago by
yueli7
▴ 250
0
votes
0
replies
136
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
3 days ago by
Javier
• 0
0
votes
0
replies
101
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
1 day ago by
Yoosef
▴ 60
0
votes
0
replies
129
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic
Variant
predisposition
3 days ago by
mikemakaveli1
• 0
0
votes
0
replies
128
views
Modify plot R mtDNA indel
plot
mtDNA
R
3 days ago by
marco.barr
▴ 90
3
votes
0
replies
1.1k
views
Tool:
Sars-Cov-2 Genome & ACE 2 Exploration
sequence
alignment
SNP
genome
1 day ago by
Ibrahim Tanyalcin
★ 1.2k
172 results • Page
4 of 4
Recent Votes
Answer: Gene ontology and homologs
Comment: anRichment is missing
Comment: Gene Specific coverage from WGS data
Comment: Gene Specific coverage from WGS data
Comment: High Malat-1 expression in single cell data
A: Meme-Tools: Bit score
Meme-Tools: Bit score
Recent Locations •
All
United States,
just now
Russia,
2 minutes ago
United States,
3 minutes ago
France,
7 minutes ago
USA,
8 minutes ago
United States,
9 minutes ago
United States,
9 minutes ago
Recent Awards •
All
Popular Question
to
JACKY
▴ 140
Popular Question
to
bhumm
▴ 140
Teacher
to
Matthias Zepper
4.6k
Popular Question
to
sidrah.maryam
▴ 50
Popular Question
to
gubrins
▴ 290
Popular Question
to
arshad1292
▴ 100
Popular Question
to
ahmad mousavi
▴ 800
Recent Replies
Comment: anRichment is missing
by
GenoMax
142k
Consider emailing Dr. Horvath about this. Until enough people make him aware of this issue WGCNA "problem" is unlikely to get fixed.
Comment: anRichment is missing
by
Tatyana
• 0
Unfortunately, there are only tutorials and codes for tutorials for WGCNA, not installation files for any their packages... :(
Comment: anRichment is missing
by
GenoMax
142k
See this link for the WGCNA documentation and code from Peter Langfelder : https://bioinformatics.stackexchange.com/questions/21885/where-t…
Comment: anRichment is missing
by
Tatyana
• 0
The problem is back, Horwath's lab web is down again. Is it possible to get anRichment istallation file somewhere? (The greater problem is …
Comment: 16S rRNA microbiome differential abundance analysis with DESeq2 finds same micro
by
andres.firrincieli
3.6k
1. Maribaculaceae is a family not a genus 2. Who said that ASV with the same taxonomic classification must have the same behaviour? 3. With…
Comment: Question regarding WGCNA
by
andres.firrincieli
3.6k
the within-group variability is so small that these look like technical replicates rather than independent biological replicates
Answer: Gene ontology and homologs
by
geneontologyhelp
▴ 400
No. Homology is defined as shared common ancestry. Two genes that take part in the same biological process may not have the same functio…
Answer: error in R code
by
Matthias Zepper
4.6k
I quickly googled [the source code of that function][1], and the error is triggered by this condition: if(length(wn) < 1 || !is.whol…
Comment: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴ 190
Thanks for the explanation. I noticed and corrected a typo in which "*read* reverse strand" initially read as "*mate* reverse strand" in t…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴ 90
It's a commercial product, a *Staphylococcus hominis* genome. This species is not found in the DADA2 results, so I guess DADA2 is not ident…
Comment: Question regarding WGCNA
by
Ram
43k
Plots are incomplete without legends. Please share the complete plot with mappings for shape and color.
Comment: Quetion regarding WGCNA
by
deepak
• 0
Thank you for your reply andres.firrincieli. I have attached the PCA plot of the expression data used in the WGCNA. ![enter imag…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Got it, thank you for your response. SN
Comment: How to interpret DEXseq results in therms of significance
by
Sara
▴ 30
Hi, I used write.table(as.data.frame(DEXSeqResults(MyObj)), "Results.tsv", quote=FALSE, sep="\t", dec=".") to save the result but I recei…
Comment: Tissue-specific DEG analysis with DEseq2
by
M.
▴ 30
Can I ask what do you exactly mean by same experiment? If you are talking about the same donor and the same procedure, unfortunately, not a…
Traffic: 2607 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6