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137

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efficient algorithm for de novo assembly using de bruijn graph

assembly date palm de bruijn k-mers written 14 days ago by StudentBio • 0 • updated 9 days ago by colindaven • 740

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genomescope profile failed to converge

genomescope k-mers jellyfish written 15 days ago by StudentBio • 0 • updated 15 days ago by lieven.sterck • 1.9k

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129

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choice of k value for mapping my reads again a reference genome

smalt mapping k-mers written 16 days ago by StudentBio • 0 • updated 16 days ago by Ram ♦ 16k

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2.5k

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K-mers using JEllyfish

counters sequence k-mers jellyfish written 4.1 years ago by itsthegodzgarbage • 10 • updated 12 months ago by SmallChess • 460

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754

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Counting k-mers in a multifasta file

k-mer counting k-mers written 15 months ago by ldyer2006 • 20 • updated 15 months ago by Alex Reynolds ♦ 24k

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Problem: kmergenie has a minimum number of input of reads?

kmergenie k-mers written 3.4 years ago by Leandro de Mattos • 80

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k-mer tools - probability based models

rna-seq k-mers written 4.0 years ago by sam • 130 • updated 4.0 years ago by edrezen • 700

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Recent Replies

C: Cutadapt installation - user defined directory by Vimalkumar Velayudhan • 180
Cutadapt has minimal dependencies so with Python 3, you could also do the following assuming the...
A: Downstream proportions are not identical in vennpie and upsetplot results by Guangchuang Yu • 1.9k
thanks for reporting this issue. It has been fixed in `v=1.16.1`.
C: multiple fasta conversion using java by signaturemdx • 0
It's working nicely !! Thanks
C: multiple fasta conversion using java by signaturemdx • 0
Thanks for the tip !
C: Need help with R script to edit x-axis of snp density plot by Vijay Lakhujani ♦ 2.8k
Hello deepti, Please use the formatting bar (especially the `code` option) to present your post ...
C: what package can I use to plot CpG SNP associations? by Shicheng Guo • 5.0k
did you contact the authors? I think they might be share the script with you if you make request.
C: Understanding IntersectBed columns by h.mon ♦ 16k
You should use the `-split` parameter with intersectBed, as this is RNAseq.
C: Reference is deletion and negative genomic position label by Shicheng Guo • 5.0k
for GRCh38 $ tabix ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/VCF/All_20...
C: Need help with R script to edit x-axis of snp density plot by cpad0112 • 7.7k
some example data would help @OP
A: IGV terminology questions: "inferred" insert size vs. "expected" insert size and by h.mon ♦ 16k
1) yes 2)yes 3) yes 4) yes > Based on the starting position genomic coordinates of this re...
C: Reference is deletion and negative genomic position label by cpad0112 • 7.7k
querying b151 dbsnp vcf didn't yield any results. $ tabix ftp://ftp.ncbi.nih.gov/snp/organi...
C: Checking for a specific file type by mdsiddra • 0
Thankyou for this sharing..! Can I also get some help about my question I mentioned above.???

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