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Recent Replies
Comment: ceres score in crispr screen
by
edus_bioinfo
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20
they didnt provide a good tutorial thats why i cannot determine whether i have problem in input files
ps: but i cannot run the demo files
Comment: ceres score in crispr screen
by
edus_bioinfo
▴
20
:) technical support.
> my run is giving
Error: Encountered internal Bowtie 2 exception (#1) Command: /Users/sudeeris/Downloads/bowtie2-…
Comment: Network analysis for two Factors
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seidel
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Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language?
[1]: …
Comment: ceres score in crispr screen
by
seidel
10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
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Chris
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10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me
wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
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5.4k
First issue is that GEO series matrix files can't be read using `read.delim`.
Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
•
0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
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joe
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350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
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Pierre Lindenbaum
152k
> But other solutions are also fine:
bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★
1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
•
0
Hello, my problem is the same as yours, did you finally solve this problem?
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