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News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
13 months ago by mia.nahom ▴ 10
0
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0
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750
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News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
13 months ago by bioinformatics.ca • 0
0
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0
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419
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News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
13 months ago by Stephen • 0
0
votes
0
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485
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News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
12 months ago by Stephen • 0
0
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0
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425
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
13 months ago by Sole • 0
0
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2
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889
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News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
10
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4
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1.3k
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News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 13 months ago by ▴ 30 • written 14 months ago by 11k
1
vote
0
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945
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News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
1
vote
1
reply
675
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
13 months ago by jared.andrews07 ★ 16k
1
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0
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438
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News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
0
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0
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445
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News: Environmental Metagenomics course
Environmental-Metagenomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
0
votes
0
replies
424
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News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 11 months ago by 43k • written 14 months ago by ★ 2.5k
1
vote
0
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490
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News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
14 months ago by mia.nahom ▴ 10
1
vote
0
replies
449
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News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
14 months ago by carlopecoraro2 ★ 2.5k
0
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0
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380
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News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
14 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
912
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 14 months ago by 43k • written 14 months ago by ★ 1.2k
0
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0
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449
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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386
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
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0
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573
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News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
5
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3
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915
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News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.6k
0
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1
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423
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News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
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0
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394
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News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
14 months ago by carlopecoraro2 ★ 2.5k
0
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0
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477
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News: Introduction to GWAS course in June
GWAS R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
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0
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741
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News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
359
views
News: Course - Version Control for Researchers
VersionControl GIT Github
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
506
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
0
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0
replies
396
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
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3
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887
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News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
14 months ago by PeterC_NCBI ▴ 410
0
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0
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375
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News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
15 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
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589
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News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
15 months ago by carlopecoraro2 ★ 2.5k
2
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0
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422
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News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
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0
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383
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News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
2
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1.1k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
0
votes
0
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468
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News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 11 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
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1.3k
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
15 months ago by PeterC_NCBI ▴ 410
1
vote
2
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684
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News: Course: Network Analysis in R
NetworkAnalyis R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
476
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
15 months ago by mia.nahom ▴ 10
0
votes
0
replies
621
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
0
replies
690
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
15 months ago by carlopecoraro2 ★ 2.5k
0
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0
replies
555
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News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
937
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
15 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
472
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
15 months ago by carlopecoraro2 ★ 2.5k
0
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0
replies
442
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 15 months ago by 43k • written 15 months ago by • 0
0
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0
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744
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News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
15 months ago by David Langenberger 11k
1
vote
5
replies
1.1k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
450
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
655
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
1
vote
2
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1.8k
views
News: New chat server (Discord) for bioinformatics
community
15 months ago by Samuel Lampa ★ 1.3k
0
votes
0
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654
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
1
vote
3
replies
924
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
16 months ago by PeterC_NCBI ▴ 410
1,000 results • Page 5 of 20
Recent Votes
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
Comment: Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x
Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
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Popular Question to maryak ▴ 20
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Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis by GenoMax 141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
Answer: cnetplot category names are too long by bkleiboeker ▴ 370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
Comment: Telescope issue by GenoMax 141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
Comment: Mutect2 for mitochondria variant discovery by GenoMax 141k
> i keep getting error. Without providing information about the actual error no one can help. Please edit the post and add this informati…
Comment: Telescope issue by eleven11 • 0
Thank you! how would I correct that?
Comment: DESeq2 processing problems by Ram 43k
This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
Comment: Post-imputation plot by kl ▴ 10
All of them are G/C and A/T variants Some seem mismatches based on AF and some seem to need flipping. I guess I am confused, as in the Mich…
Comment: Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x by Nafi • 0
Thank you for the reply I have 16 gb of RAM then I can give a try then.
Comment: Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq by i.sudbery 19k
Can you give more details of the data you are planning to use. What is the different studies, what are the comparisons you want to make.
Comment: p-value in CIBERSORT by michelafrancesconi9 ▴ 20
Thank you so much!!
Comment: POSSUM not working due to incompatible pssm file by Ram 43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: after selecting specific GO terms to plot, cneplot is not showing any color for by Ram 43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: Telescope issue by GenoMax 141k
Looks like there is a tab missing between the sequence and the quality string.
Comment: Post-imputation plot by LChart 3.9k
I would pull out the variants with panel_freq ~ 1 - upload_freq and min(panel_freq, upload_freq) < 0.4. I would check if these are G/C or A…
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