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25 results • Page
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News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
19 days ago by
David Langenberger
11k
8
votes
2
replies
786
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
24 days ago by
David Langenberger
11k
0
votes
0
replies
194
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 11 days ago by
Ram
43k • written 11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
89
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
119
views
News:
8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
updated 4 days ago by
Ram
43k • written 5 days ago by
David Langenberger
11k
0
votes
0
replies
86
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
14 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
184
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
15 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
146
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 14 days ago by
Ram
43k • written 14 days ago by
polarise
▴ 380
0
votes
0
replies
117
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 5 days ago by
Ram
43k • written 5 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
178
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 11 days ago by
Ram
43k • written 11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
149
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
28 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
127
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 18 days ago by
Ram
43k • written 18 days ago by
Transmitting Science communication
▴ 70
1
vote
0
replies
178
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
updated 21 days ago by
Ram
43k • written 23 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
116
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
19 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
178
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 13 days ago by
Ram
43k • written 13 days ago by
David Langenberger
11k
0
votes
0
replies
189
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
148
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 26 days ago by
Ram
43k • written 26 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
123
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 21 days ago by
Ram
43k • written 21 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
160
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 4 days ago by
Ram
43k • written 4 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
125
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
188
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 3 days ago by
Ram
43k • written 3 days ago by
Claire Watson
▴ 60
0
votes
0
replies
134
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 8 days ago by
Ram
43k • written 9 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
127
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 18 days ago by
Ram
43k • written 18 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
121
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
133
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 18 days ago by
Ram
43k • written 18 days ago by
Transmitting Science communication
▴ 70
25 results • Page
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Recent Votes
Comment: High Malat-1 expression in single cell data
Answer: Extract protein sequence
Answer: Extract protein sequence
C: How do I ask a question on Biostars?
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
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Recent Replies
Comment: Perfom a Gene Ontology Analysis from GO terms txt file
by
sansan_96
▴ 80
Your table should look like this (GO terms): ``` geneid GOid Zm00001eb000010 GO:0003690;GO:0003727;GO:0019843;GO:0005739 Zm00001eb000020 G…
Answer: Perfom a Gene Ontology Analysis from GO terms txt file
by
sansan_96
▴ 80
I understand, here is an example with topGO where you need a differential expression table (DESeq2 for example) and a table of GO terms: …
Comment: Perfom a Gene Ontology Analysis from GO terms file
by
Hamtaro
▴ 50
Thank u for your reply. The problem is that I used the genome and gene annotation from that webpage, not ensemble or ncbi, so I have to use…
Comment: Perfom a Gene Ontology Analysis from GO terms file
by
sansan_96
▴ 80
Hello, To perform functional enrichment analysis there are packages such as topGO or clusterProfiler that can work very well. Lately I've …
Answer: Post-imputation plot
by
LChart
3.9k
The anti-diagonal band does suggest some fraction of genotypes are strand-flipped - probably G/C or A/T variants.
Comment: Differential Accessibility
by
Ram
43k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: Extract protein sequence
by
anna
▴ 20
Thank you! I need this for eukaryotic organism and known protein sequences, but I guess seqkit would work well!
Comment: Landmark gene selection in L1000.
by
GenoMax
141k
Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/ > so I want to understand how you reduced the 12063 genes to 978…
Comment: What should I consider as FASTA for dataset?
by
Nafi
• 0
Protein attribute prediction
Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
by
cwwong13
▴ 40
@kevin May I know whether your comments and edits were mainly based on the fact that "Previously, [crazy] people had been using the origina…
Comment: Programmatically retrieving positions of protein active site residues
by
Wayne
★ 2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 570
> Can you clarify what you mean by "100% of reads pass cutadapt, even > though 70% of reads contain adapters and get trimmed. The header o…
Comment: Software to separate reads from different individuals
by
GenoMax
141k
If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
Answer: Extract protein sequence
by
Matthias Zepper
4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for? If it happens to be a microbia…
Comment: How to use limma to find differentially expressed genes in response to a continu
by
pairedttest
▴ 10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
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