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Command line argument error: Argument "query". File is not accessible: `psitmp24348007f0101.fasta'

sequence psipred written 6 months ago by radha.jg • 0

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202

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missing .chk and .mtx files after using psipred script.

.mtx .chk psipred linux written 7 months ago by shalinikaushik1293 • 0

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answer

265

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time taken by pgenthreader.sh script

pgenthreader psipred blastpgp written 10 months ago by shalinikaushik1293 • 0

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229

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psipred error. Unmatched '`'.

psipred tcsh shell linux written 11 months ago by shalinikaushik1293 • 0

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699

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why polyQ are not part of intrisicaly disordered region (IDR) in disopred3 prediction?

idr disopred prediction protein psipred written 22 months ago by boaty • 110

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945

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5 follow

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Converting runpsipred Script to Work on Windows OS

psipred windows written 2.3 years ago by Bara'a • 250

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3.8k

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PSIPRED, how to install and make it work?

software error psipred blast written 3.2 years ago by ac.research • 10 • updated 3.2 years ago by fishgolden • 450

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1.1k

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"ERROR IN WEIGHTS" when running PSI-BLAST via PSIPRED

psipred weights blast written 4.0 years ago by ericbrenner • 0

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2.0k

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help with installation of psipred

ncbi toolkit psipred install psi-blast written 4.7 years ago by pingEde • 30 • updated 4.5 years ago by daniel.buchan • 0

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1.4k

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Error while running PSI-PRED

psipred blastpgp written 5.8 years ago by sendambuj • 0 • updated 5.8 years ago by _r_am ♦ 31k

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C: Bacterial reads in ATAC-seq by C4 • 0
Ok thank you for the feedback!
C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command by e.rempel • 980
From the top of my head, try ucsc Followed by TAB button. It could be that the installed co...
C: convert .csv file to a .vcf file by Pierre Lindenbaum ♦ 131k
works on my machine. Did you forgot to add the ` tr -d ' '`
C: convert .csv file to a .vcf file by Jamie Watson • 0
Hi again, Yes I made it work. However, when I try to liftOver using GATK Picard, it says **'The p...
A: makeblastdb Fasta file with 25 sequences gives Error: mdb_env_open: There is no by nyoungb2 • 0
Sorry to hit up an old thread, but I have the same issue when running jobs on a linux cluster. I'...
C: How to load several modules at the same time? by genomax ♦ 92k
Are you specifically asking about `conda`? You could create an environment that has all the progr...
C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command by enjolras • 0
I also tried by installing the binaries as explained in UCSC website at example3: https://genome....
C: False positives in manta structural variant calling by samuel.a.odonnell • 60
You may want to look at using an ensemble approach, employing manta alongside other SV calling to...
C: Why does annotate give an error? by mohamadrezakeshtkar • 0
In Figure 2, I added homer / bin to the PATH. export PATH=$PATH:/Desktop/homer/bin ...
C: Combining nanopore libraries by samuel.a.odonnell • 60
Just to note, I think you were correct to have added the ultra-long reads for genome assembly, it...
C: Survival analysis using COX-PH by Kevin Blighe ♦ 67k
There is a disconnect between your first 2 lines of code. Please explain Also, the output of `su...
C: extract single contig from fasta file based on name? by samuel.a.odonnell • 60
Considering you are looking for contigs I am going to assume that you mean '.fa' and not '.fq' (a...

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