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why polyQ are not part of intrisicaly disordered region (IDR) in disopred3 prediction?

idr disopred prediction protein psipred written 5 months ago by boaty • 60

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558

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5 follow

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Converting runpsipred Script to Work on Windows OS

psipred windows written 10 months ago by Bara'a • 230

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PSIPRED, how to install and make it work?

software error psipred blast written 21 months ago by ac.research • 10 • updated 21 months ago by fishgolden • 390

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838

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"ERROR IN WEIGHTS" when running PSI-BLAST via PSIPRED

psipred weights blast written 2.6 years ago by ericbrenner • 0

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1.4k

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help with installation of psipred

ncbi toolkit psipred install psi-blast written 3.3 years ago by pingEde • 30 • updated 3.1 years ago by daniel.buchan • 0

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Error while running PSI-PRED

psipred blastpgp written 4.3 years ago by sendambuj • 0 • updated 4.3 years ago by RamRS ♦ 22k

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Recent Replies

A: MarkDuplicates output file in GATK pipeline by Pierre Lindenbaum ♦ 120k
> So should I proceed with this marked_duplicates.bam file for analysis (converting to VCF), ...
C: low bootstrap value? by Dineshkumar K • 10
@Michael Dondrup, As I already excluded `gblocks` trimming step, despite end up with the same boo...
C: low bootstrap value? by Dineshkumar K • 10
@lieven.sterck, I have already done with nucleotide sequences, but end up with the same bootstrap...
C: low bootstrap value? by Dineshkumar K • 10
@jrj.healey, As you mentioned, all my genomes belongs to the same species, varied by sub species...
C: How to subset a set of variations from a VCF on specific chromosome and between by Pierre Lindenbaum ♦ 120k
> while I want to get all the variations even the duplicated one show us the variants ignored...
A: Protege Ontology - annotations and entities missing by priyas772 • 0
okay , thank you so much
A: How to subset a set of variations from a VCF on specific chromosome and between by Defne • 0
Thank u for help! I used the command of bcftools after indexing the vcf file. my command line loo...
A: Bootstrap & p distance distribution by hewm2008 • 20
* 1) p_dis_X.mat is p distance matrix X=(1,2....100); To using the the part of the si...
C: Is there a command line tool that can take an alignment fasta and input and outp by Joel Wallenius • 10
I'll see if I can get in touch with him then! If I change back to LaTeX I can get it working OK,...
C: plotting problem with loop in R by smyiz • 0
I think, your formulas equal ( x * y) / sqrt(sum(x)^2 * sum(y)^2. In uncentered correlation, it s...
C: On identifying differentially expressed genes using RNA-Seq (fpkm) data. by Dylan • 40
Thank you for your help! I will try to obtain DE genes using raw counts.
C: low bootstrap value? by Michael Dondrup ♦ 46k
You could also try to create alignments for each protein first, and then concatenate the alignmen...

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