quast Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: quast • reset

or Classic search

votes

answer

212

views

answer

Is there any alternative to QUAST software to evaluate de novo assembly results?

assembly quality evaluation quast written 9 weeks ago by oxfordsoccer • 10 • updated 9 weeks ago by Sej Modha • 2.8k

votes

answers

976

views

answers

Tool for de novo assembly evaluation ??

soap quast written 2.0 years ago by Picasa • 340

votes

answer

849

views

answer

What is "Total Length" in QUAST?

quast written 2.2 years ago by ' • 160 • updated 2.2 years ago by thackl • 2.4k

votes

answers

660

views

answers

traversal stats explanations

assembly contig quast traversal minia written 2.6 years ago by pbigbig • 190

Recent Votes

Recent Locations • All »

University College London Cancer Institute, 7 minutes ago
Japan, 8 minutes ago
Malaysia, 9 minutes ago
Glasgow - UK, 9 minutes ago

Recent Awards • All »

Scholar to Kevin Blighe ♦ 16k
Scholar to genomax ♦ 46k
Teacher to Jean-Karim Heriche ♦ 15k
Autobiographer to Roopra Biomols • 0
Teacher to Kevin Blighe ♦ 16k
Scholar to Kevin Blighe ♦ 16k

Recent Replies

C: Quantifying repetitive elements from RNA-seq (hisat2 or Salmon) by ywchen • 0
Thanks for your answer. I'm concerned about memory usage by STAR and maybe I will start hisat2 wi...
C: Probit Regression modelling in R by Kevin Blighe ♦ 16k
Hi Krushnach, there is not enough information provided - perhaps not even you is sure of the expe...
A: How indentify shared genes between two or more bacterial genomes? by Fabio Marroni • 1.7k
[Mummer][1]. Just because is the only one I know! [1]: http://mummer.sourceforge.net/
A: Database or information of mouse (MM) mitochondrial cDNA/RNAs by genomax ♦ 46k
Let us try BioMart at Ensembl instead. 1. Go to http://ensembl.org (you may be redirected to a ...
C: Processing GTEx RNA-Seq data using the TCGA bioinformatic pipeline by smsinks • 0
This is exactly what I was looking for. Cheers!
A: Fold recognition application by cdsouthan • 1.8k
Don't bother, try Phyre https://cdsouthan.blogspot.se/2018/03/playing-with-phyre.html (DOInt I'...
C: Database or information of mouse (MM) mitochondrial cDNA/RNAs by mhyunjunkang • 20
Thank you for the information. But the FASTA sequences are not available in that way....
A: Problem in installing argyle package to R in ubuntu by cpad0112 • 4.4k
successful installation on mint linux 18.3 (ubuntu based-base xenial ) about system: Linux g...
C: Problem in installing argyle package to R in ubuntu by hasani.iut6 • 30
As I told I'm using Ubuntu, Thank you I will try in the other time,
A: Database or information of mouse (MM) mitochondrial cDNA/RNAs by genomax ♦ 46k
1. [Do this search][1] at Mouse Genome Informatics site. 2. Click on the `MouseMine` button. 3...
C: Look for similar DNA sequences to a given sequence in the NCBI database by Ram ♦ 14k
Pierre has given you the lead to the solution, try implementing it yourself and come back to us i...
C: Look for similar DNA sequences to a given sequence in the NCBI database by erans995 • 0
It's a group assignment,we're partners. If you help him, you help me!

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1014 users visited in the last hour