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- Explanation Of Heterozygous Variants Presence On Male X Chromosome (Exome Data)
- Different alignment rates for Hisat2 and STAR, Hisat2 has lower alignment rate and STAR have many multi aligned reads
- C: How to rename chromosome names in GTF file?
- How to export taxonomies from MEGAN (input is BLAST table)
- Good pratice for clinical NGS data pipelines
- Sorted scaffolds of a draft genome according to a reference genome
- A: Narrow & Broad peaks from 'macs2 bdgdiff'
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Recent Replies
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C: Different alignment rates for Hisat2 and STAR, Hisat2 has lower alignment rate a by
genomax ♦ 33k
STAR is an aligner many like so you may want to take that into consideration. If you are up for i...
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A: How can I Find modules of a gene? by
jrj.healey • 2.4k
I assume this means genes and any surrounding genes within an operon typically? One such tool, w...
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A: how to compare 1st row and 1st column value with rest of the row values in R? by
blacktomato27 • 10
Dear Cristian Thanks lot for your help in solving this problem if anyone of the parent either P1 ...
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C: How can I Find modules of a gene? by
Michael Dondrup ♦ 43k
Please expand your question to contain sufficient amount of detail.
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C: How to rename chromosome names in GTF file? by
cpad0112 • 1.9k
Correct. Sed syntax is s/old string /newstring/ (/ is a markup for before and after). g is for gl...
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C: Different alignment rates for Hisat2 and STAR, Hisat2 has lower alignment rate a by
Claireyingying • 0
Thank you for your answer, Satyajeet. I used SortMeRNA to filter the rRNA, the command line and ...
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C: Remove copied reads from a bam by
Kevin Blighe • 1.1k
I don't quite fully understand what happened to your data - are you sure that you know what has h...
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C: how to compare 1st row and 1st column value with rest of the row values in R? by
cristian • 80
What does this mean: ' i want to check whether P1 and P2 match for M1 or not' ? Do you only want ...
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A: Narrow & Broad peaks from 'macs2 bdgdiff' by
jared.andrews07 • 90
There are no parameters like that for `bdgdiff`, which just looks at the raw bedgraph pileups to ...
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C: how to compare 1st row and 1st column value with rest of the row values in R? by
cristian • 80
How do you define 'between them' when the parents are not homozygous or the data not available, M...
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C: how to compare 1st row and 1st column value with rest of the row values in R? by
cristian • 80
Sorry, can you explain the problem more clearly? Do you want to output columns M2 and M3 in the f...
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C: How to rename chromosome names in GTF file? by
cristian • 80
Maybe you can consolidate your comments into an answer and I can accept it?
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