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Blog: Hacking QUAST and changing minimum allowed identity percentage setting

assembly tutorial quast genomics blog written 29 days ago by inaciogmedeiros • 10 • updated 29 days ago by h.mon ♦ 20k

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430

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Is there any alternative to QUAST software to evaluate de novo assembly results?

assembly quality evaluation quast written 8 months ago by oxfordsoccer • 10 • updated 8 months ago by Sej Modha ♦ 3.7k

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1.2k

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Tool for de novo assembly evaluation ??

soap quast written 2.5 years ago by Picasa • 380

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1.1k

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What is "Total Length" in QUAST?

quast written 2.7 years ago by ' • 160 • updated 2.7 years ago by thackl • 2.5k

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750

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traversal stats explanations

assembly contig quast traversal minia written 3.0 years ago by pbigbig • 190

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Recent Replies

A: How to separate a strain of MTB drug wise? by rizoic • 50
Incase you need a grep/awk based solution based on your tags. You can run something on these li...
C: Python Script to Calculate Total Number of genes by anasjamshed1994 • 0
>>> from Bio.Seq import Seq >>> genome = open("C:\\Users\\cnn\\Desktop\\MS(BI)\...
A: how to set metrics file when using MarkDuplicates in Picard by Paul • 1.1k
Hi, my syntax looks like: picard -Xmx"$memory"g -Djava.io.tmpdir=$PWD/tmp -XX:ParallelGCThre...
C: Samtools view behaviour with skipped region from the reference (N in Cigar) by Bastien Hervé • 2.2k
I don't want to take up any of your time, if you please I need an advise here I will implement t...
A: SHAPEIT error after run: x samples are included in several duos/trios by chariko • 30
did you manage to solve your problem?
C: Samtools view behaviour with skipped region from the reference (N in Cigar) by Bastien Hervé • 2.2k
Thanks Pierre for this solution and I bet this one is working very well, but I don't want to mess...
C: Is TCGA Breast cancer data strand specific? by ATpoint ♦ 8.0k
The post you link is somewhat unfortunate. While it is true that Illumina platforms sequence one ...
C: To fetch the reads which are being partially mapped to the genome by swadha • 20
I am trying to find mRNA reads which are trans-spliced (this results when protein-coding regions ...
C: High Kmer Content in middle of the read by jgarces • 0
Ok, thanks anyway... so I guess, according to Ian's response, that's useless try to do some kind ...
C: Why am I getting different ensembl gene ids for a given gene symbol? by Emily_Ensembl ♦ 16k
You should make a new post on BioStars for this question – you'll get a lot more answers.
C: To fetch the reads which are being partially mapped to the genome by WouterDeCoster ♦ 32k
Which problem are you working on? What is the origin of these reads which align only half?
C: How to extract SNPs from multiple alignment fasta file? by Pierre Lindenbaum ♦ 113k
http://lindenb.github.io/jvarkit/

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