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Converting blastn output to VCF (for SNPs): what is the quickest way?
vcf xml blast snp convert written 4 months ago by Macspider • 2.5k
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2
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366
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How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 5 months ago by aqsaawan.459 • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 112k
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232
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1
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Some SNP XML document not available via an eutils query
xml snp eutils written 5 months ago by longoka • 30
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262
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Creating pathway diagrams from xml file
pathway xml written 6 months ago by Natasha • 30
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259
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Biopython NCBIXML Parsing - Field Parameter
xml parse biopython ncbixml written 7 months ago by maximilian.mayerhofer • 20
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1
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266
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1
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Parsing Standalone Blast XML Output with Biopython on Linux
xml parse biopython blast written 7 months ago by maximilian.mayerhofer • 20 • updated 7 months ago by Pierre Lindenbaum ♦ 112k
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1
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289
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parse xml proteinpredict files
proteinpredict parse biopython xml written 8 months ago by Biojl • 1.6k • updated 8 months ago by Pierre Lindenbaum ♦ 112k
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1
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286
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How can I install xml development headers (version 2.9.1) and xz development headers(version 5.1.1) using ***sudo apt-get*** ?
xml antismash written 8 months ago by jth6974 • 0 • updated 8 months ago by WouterDeCoster ♦ 32k
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443
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Blast-XML and Biopython: extract query-anchored results (i.e. MSA)
xml multiple sequence alignment biopython blast written 10 months ago by LeWöps • 0 • updated 10 months ago by Peter ♦ 5.6k
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376
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Nested loops write in xml
python loop biopython efetch xml written 12 months ago by Lilizine • 0
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1
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1.1k
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1
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Parse Drugbank XML in R
gene xml drug R written 13 months ago by kakukeshi • 50 • updated 13 months ago by EverInEarnest • 30
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1
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589
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1
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tool_dependencies.xml Not Working - Why?
galaxy assembly dependency tool xml written 15 months ago by mltaylor211 • 0 • updated 13 months ago by martenson • 380
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1
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659
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URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 15 months ago by Pierre Lindenbaum ♦ 112k • updated 15 months ago by genomax ♦ 55k
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466
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Edirect utility xtract conditional error question
edirect xtract xml written 16 months ago by him1532 • 0 • updated 16 months ago by genomax ♦ 55k
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9 follow
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Blast Text-Output To Xml Converter
xml blast conversion written 7.8 years ago by Leszek ♦ 3.9k • updated 16 months ago by Biostar ♦♦ 20
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415
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Downloading 'suspect' NCBI data with Eutils
ncbi xml genedocsum written 16 months ago by cheng#13# • 0
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1
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650
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1
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Editing and saving KEGG pathway files
xml kegg cytoscape written 18 months ago by justp • 10 • updated 18 months ago by theobroma22 • 1.1k
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1
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1.5k
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1
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How to convert xml file to txt file
table xml written 20 months ago by newbiebio • 80
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2
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How to simply filter a xml file?
filter blast xml written 20 months ago by haro • 230 • updated 20 months ago by Alex Reynolds ♦ 25k
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5 follow
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How to access GeneCards via XML?
xml genecards written 4.3 years ago by bounlu • 140 • updated 21 months ago by support • 30
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1.2k
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Parsing residue numbers form PDB SIFTS XML files
pdb xml sfits R python written 2.7 years ago by bhadra4282 • 0 • updated 23 months ago by Biostar ♦♦ 20
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How to parse NCBI Blast XML to retrieve "hsp_query-from in Biopython?
xml parse biopython written 24 months ago by philipp • 10 • updated 24 months ago by Markus • 200
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1
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816
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how to include taxonomy information in blstx xml output ?
xml blastgrabber taxonomy in blast blast written 2.0 years ago by Farbod • 3.1k • updated 2.0 years ago by piet • 1.5k
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Extract sequence of BLAST hits
xml blast written 2.0 years ago by ThePresident • 100
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609
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Problem with Cell Designer compatibility with SBML (xml) files
cell designer xml sbml compatibility written 2.3 years ago by myasemi15 • 0
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1
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511
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1
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where can I download a mzIdentML dataset
mzidentml xml database written 2.4 years ago by sureshhewabi • 0 • updated 2.4 years ago by natasha.sernova • 3.0k
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5 follow
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How To Extract Desire Genes Blast Xml Result From A Big Blast Xml File
xml blast written 5.2 years ago by KJ Lim • 120 • updated 2.5 years ago by Shyam • 120
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Parsing Blast Results In Java
biojava parsing blast xml written 4.9 years ago by weslfield • 90 • updated 2.6 years ago by Biostar ♦♦ 20
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How to query nr database using a list of GI numbers to get xml files?
latest gi xml blast annotation written 2.7 years ago by grayapply2009 • 160 • updated 2.7 years ago by apt.university • 70
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972
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import stke pathway xml file into cytoscape
pathway xml network cytoscape written 2.9 years ago by pengchy • 400
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