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URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 1 day ago by Pierre Lindenbaum ♦ 94k • updated 1 day ago by genomax ♦ 29k
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87
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Edirect utility xtract conditional error question
edirect xtract xml written 4 weeks ago by him1532 • 0 • updated 4 weeks ago by genomax ♦ 29k
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5
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9 follow
5
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Blast Text-Output To Xml Converter
xml blast conversion written 6.6 years ago by Leszek ♦ 3.7k • updated 5 weeks ago by Biostar ♦♦ 20
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126
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Downloading 'suspect' NCBI data with Eutils
ncbi xml genedocsum written 6 weeks ago by cheng#13# • 0
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1
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164
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1
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Editing and saving KEGG pathway files
xml kegg cytoscape written 12 weeks ago by justp • 0 • updated 12 weeks ago by theobroma22 • 690
2
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1
answer
530
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1
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How to convert xml file to txt file
table xml written 5 months ago by newbiebio • 60
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2
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242
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2
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How to simply filter a xml file?
filter blast xml written 5 months ago by haro • 70 • updated 5 months ago by Alex Reynolds ♦ 19k
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2
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990
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2
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How to access GeneCards via XML?
xml genecards written 3.1 years ago by bounlu • 100 • updated 6 months ago by support • 20
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717
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Parsing residue numbers form PDB SIFTS XML files
pdb xml sfits R python written 17 months ago by bhadra4282 • 0 • updated 8 months ago by Biostar ♦♦ 20
1
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1
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370
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1
answer
How to parse NCBI Blast XML to retrieve "hsp_query-from in Biopython?
xml parse biopython written 8 months ago by philipp • 10 • updated 8 months ago by Markus • 180
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1
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348
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1
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how to include taxonomy information in blstx xml output ?
xml blastgrabber taxonomy in blast blast written 9 months ago by Farbod • 2.9k • updated 9 months ago by piet • 1.3k
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2
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599
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2
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Extract sequence of BLAST hits
xml blast written 9 months ago by ThePresident • 40
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306
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0
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Problem with Cell Designer compatibility with SBML (xml) files
cell designer xml sbml compatibility written 13 months ago by myasemi15 • 0
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1
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291
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1
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where can I download a mzIdentML dataset
mzidentml xml database written 13 months ago by sureshhewabi • 0 • updated 13 months ago by natasha.sernova • 2.4k
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1
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How To Extract Desire Genes Blast Xml Result From A Big Blast Xml File
xml blast written 4.0 years ago by KJ Lim • 110 • updated 14 months ago by Shyam • 80
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2
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2.1k
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2
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Parsing Blast Results In Java
biojava parsing blast xml written 3.6 years ago by weslfield • 80 • updated 16 months ago by Biostar ♦♦ 20
4
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2
answers
548
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2
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How to query nr database using a list of GI numbers to get xml files?
latest gi xml blast annotation written 17 months ago by grayapply2009 • 150 • updated 17 months ago by apt.university • 70
1
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1
answer
638
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1
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import stke pathway xml file into cytoscape
pathway xml network cytoscape written 19 months ago by pengchy • 340
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1
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841
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1
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Split a blastp xml output
xml blast split written 19 months ago by Stela Ribeiro • 10
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2
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1.1k
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2
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How to parse Blast output from new XML2 format with taxid and sciname?
xml sequence biopython blast parsing written 24 months ago by n8upham • 0 • updated 19 months ago by 5heikki ♦ 6.4k
2
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1
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690
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1
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Blast Tabular to XML
xml convert blast written 20 months ago by moranr • 210 • updated 20 months ago by michael.ante • 1.6k
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658
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Problem using Krona Phylogeny to make xml file tree, get blank page
phylogeny xml krona blank written 23 months ago by cara78 • 10
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1.3k
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1
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How To Retrieve Data From Jgi Automatically Given A Set Of Ids?
R api python xml written 3.6 years ago by Manu Prestat ♦ 3.8k • updated 23 months ago by ooddiittyy • 0
3
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1
answer
896
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1
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software advise: visualise the phylogenetic tree that uses bubbles on the branches to indicate abundance.
advise xml tree phylogenetic abundance written 23 months ago by cara78 • 10 • updated 23 months ago by jhc • 2.5k
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5 follow
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Url To Download Sra Experiment_Package Xml File Programmatically
sra xml download written 6.4 years ago by Tim • 320 • updated 23 months ago by Tom Koch • 100
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2
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1.5k
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2
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Parse the Xml response from Entrez Db=bioproject Using Biopython eFetch
xml efetch entrez biopython parsing written 2.1 years ago by Prasad • 10 • updated 2.1 years ago by beegrackle • 90
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1
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7.0k
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1
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Using Curl To Send Xml Post Request To Pdbe
pdb xml written 5.9 years ago by Mo Sander • 40 • updated 2.2 years ago by Biostar ♦♦ 20
21
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4
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4.4k
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14 follow
4
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Parsing Pubchem Compound Records
pubchem xml database api written 5.4 years ago by Malachi Griffith ♦ 15k • updated 2.2 years ago by Biostar ♦♦ 20
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Trying to extract per-index statistics from MiSeq's GenerateFASTQRunStatistics.xml file with XPath.
xml miseq written 2.4 years ago by Charles Plessy • 2.0k • updated 2.2 years ago by Biostar ♦♦ 20
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1
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561
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1
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Microarrays and XML
xml microarrays mage-ml written 2.3 years ago by Andrea • 30 • updated 2.3 years ago by Sean Davis ♦ 23k
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