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6.1k
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Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
5.3 years ago by Denis ▴ 320
0
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1
reply
53k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
5.5 years ago by Denis ▴ 320
0
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1
reply
53k
views
Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
5.5 years ago by Denis ▴ 320
0
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0
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3.2k
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Comment: C: Prefetch error while downloading data from sequence read archive
5.5 years ago by Denis ▴ 320
0
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0
replies
3.2k
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Comment: C: Prefetch error while downloading data from sequence read archive
5.5 years ago by Denis ▴ 320
0
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2
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3.2k
views
Comment: C: Prefetch error while downloading data from sequence read archive
5.5 years ago by Denis ▴ 320
2
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5
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3.2k
views
Prefetch error while downloading data from sequence read archive
software error
5.5 years ago by Denis ▴ 320
0
votes
0
replies
4.8k
views
Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
5.5 years ago by Denis ▴ 320
0
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1
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4.8k
views
Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
5.5 years ago by Denis ▴ 320
6
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6
replies
4.8k
views
Aspera ascp command line utility inside prefetch call to facilitate SRA data downloading
genome next-gen
5.5 years ago by Denis ▴ 320
0
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1
reply
3.1k
views
Comment: C: Freebayes variant calling understanding
5.6 years ago by Denis ▴ 320
1
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2
replies
3.1k
views
Comment: C: Freebayes variant calling understanding
5.6 years ago by Denis ▴ 320
0
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0
replies
9.3k
views
Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
5.7 years ago by Denis ▴ 320
0
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0
replies
1.5k
views
RNA editing sites prediction in plant mitogenome without rna-seq data
rna editing
updated 5.7 years ago by 20 • written 8.4 years ago by ▴ 320
11
votes
7
replies
8.8k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 2.3 years ago by 45k • written 6.1 years ago by ▴ 320
0
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0
replies
2.4k
views
Comment: C: Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
5.9 years ago by Denis ▴ 320
2
votes
2
replies
815
views
Frontmost snp callers for plant genomes
alignment next-gen SNP genome
updated 5.9 years ago by 13k • written 5.9 years ago by ▴ 320
1
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1
reply
9.4k
views
Comment: C: Making nice plots based on the different metrics from VCF file
5.9 years ago by Denis ▴ 320
1
vote
0
replies
3.0k
views
Comment: C: Analysis of paired-end GBS data
updated 5.9 years ago by 5.9k • written 6.1 years ago by ▴ 320
1
vote
1
reply
2.4k
views
Comment: C: Methods for Doing Consensus Variant Calling between multiple callers
6.1 years ago by Denis ▴ 320
3
votes
5
replies
1.6k
views
Good questions and answers resources (forums) on Ecology and Statistics
ecology
updated 6.1 years ago by ▴ 180 • written 6.1 years ago by ▴ 320
0
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0
replies
1.6k
views
Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
6.1 years ago by Denis ▴ 320
0
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1
reply
1.6k
views
Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
6.1 years ago by Denis ▴ 320
1
vote
0
replies
1.2k
views
Understanding of fields meaning in HapMap.hmc.txt file from UNEAK pipeline in Tassel 3.0
sequencing genome SNP
6.1 years ago by Denis ▴ 320
1
vote
1
reply
925
views
Minimal requirements for the draft genome assembly
genome assembly sequence
updated 6.1 years ago by 45k • written 6.1 years ago by ▴ 320
0
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1
reply
5.1k
views
Comment: C: Canonical Correspondence Analysis in R with Vegan library
6.2 years ago by Denis ▴ 320
2
votes
3
replies
1.4k
views
Mapping Phred+64 encoded reads with Bowtie2
genome alignment software error
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 320
2
votes
3
replies
5.1k
views
Canonical Correspondence Analysis in R with Vegan library
R
updated 6.2 years ago by 27k • written 6.2 years ago by ▴ 320
3
votes
0
replies
7.4k
views
Answer: A: Bootstrap values on the phylogenetic tree in Ape r package
6.2 years ago by Denis ▴ 320
7
votes
4
replies
7.4k
views
Bootstrap values on the phylogenetic tree in Ape r package
R phylogenetics
6.2 years ago by Denis ▴ 320
0
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1
reply
7.4k
views
Comment: C: Bootstrap values on the phylogenetic tree in Ape r package
6.2 years ago by Denis ▴ 320
0
votes
0
replies
6.7k
views
Comment: C: How to Calculate FDR in permutation F test
6.2 years ago by Denis ▴ 320
0
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0
replies
7.1k
views
Comment: C: Performing fast bootstrap in R using ape package
6.3 years ago by Denis ▴ 320
0
votes
1
reply
4.2k
views
Comment: C: Calculate distance matrix from nucleotide alignment with multiple IUPAC ambiguit
6.3 years ago by Denis ▴ 320
0
votes
1
reply
12k
views
Comment: C: DESeq2 modelling and Wald's test
6.3 years ago by Denis ▴ 320
0
votes
1
reply
12k
views
Comment: C: DESeq2 modelling and Wald's test
6.3 years ago by Denis ▴ 320
7
votes
3
replies
4.2k
views
Calculate distance matrix from nucleotide alignment with multiple IUPAC ambiguity characters
alignment sequence phylogenetics
updated 6.3 years ago by ▴ 160 • written 6.4 years ago by ▴ 320
0
votes
1
reply
3.7k
views
Comment: C: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
6.3 years ago by Denis ▴ 320
6
votes
8
replies
3.7k
views
Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
software error alignment
updated 3.6 years ago by 105k • written 6.3 years ago by ▴ 320
0
votes
1
reply
1.4k
views
Comment: C: Mapping Phred+64 encoded reads with Bowtie2
6.3 years ago by Denis ▴ 320
0
votes
1
reply
12k
views
Comment: C: How To Split Reads For Different Flowcell Lanes In Fastq Files?
6.5 years ago by Denis ▴ 320
0
votes
1
reply
12k
views
Comment: C: How To Split Reads For Different Flowcell Lanes In Fastq Files?
6.5 years ago by Denis ▴ 320
0
votes
0
replies
30k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
6.7 years ago by Denis ▴ 320
2
votes
0
replies
10k
views
Comment: C: Fast LD computation from VCF files using tomahawk
6.8 years ago by Denis ▴ 320
2
votes
0
replies
10k
views
Comment: C: Fast LD computation from VCF files using tomahawk
6.8 years ago by Denis ▴ 320
1
vote
1
reply
3.2k
views
Interpretation of Tassel MLM output
SNP genome GWAS
6.9 years ago by Denis ▴ 320
0
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0
replies
7.1k
views
Comment: C: PLINK Haplotype blocks estimation not working
6.9 years ago by Denis ▴ 320
0
votes
0
replies
1.3k
views
Calculate a square matrix of r2 between all SNPs in genome during LD analysis
SNP genome R
6.9 years ago by Denis ▴ 320
0
votes
1
reply
30k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
6.9 years ago by Denis ▴ 320
0
votes
0
replies
8.9k
views
Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
6.9 years ago by Denis ▴ 320
146 results • Page 2 of 3
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