Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
5
votes
5
replies
291
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
6 days ago by
Chris
▴ 280
0
votes
0
replies
143
views
Empty table plot using plotGseaTable()
FGSEA
10 days ago by
Chris
▴ 280
0
votes
0
replies
157
views
Filter low express genes in microarray data
microarray
16 days ago by
Chris
▴ 280
1
vote
1
reply
452
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 23 days ago by
Gordon Smyth
★ 7.2k • written 25 days ago by
Chris
▴ 280
0
votes
0
replies
137
views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma
boxplot
4 weeks ago by
Chris
▴ 280
3
votes
3
replies
353
views
Visualize pathways from MSigDB
MSigdb
5 weeks ago by
Chris
▴ 280
0
votes
0
replies
133
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
6 weeks ago by
Chris
▴ 280
0
votes
0
replies
127
views
Number of pathway result from GSVA
GSVA
6 weeks ago by
Chris
▴ 280
1
vote
3
replies
432
views
Limma compare between 3 conditions vs 2 conditions
Limma
updated 27 days ago by
Gordon Smyth
★ 7.2k • written 7 weeks ago by
Chris
▴ 280
1
vote
1
reply
549
views
Help with SCENIC+
scenic-plus
updated 7 weeks ago by
corbettberry
▴ 10 • written 6 months ago by
Chris
▴ 280
4
votes
5
replies
466
views
Differential express genes in imbalance groups
Limma
7 weeks ago by
Chris
▴ 280
1
vote
2
replies
281
views
Upset plot
upsetplot
8 weeks ago by
Chris
▴ 280
0
votes
2
replies
286
views
How to get genes in a gene set in msigdb?
msigdb
5 weeks ago by
Chris
▴ 280
0
votes
0
replies
141
views
Function normalize raw microarray data for GSVA
gsva
9 weeks ago by
Chris
▴ 280
0
votes
0
replies
411
views
Error in validObject(.Object) : invalid class “ExpressionSet” object: sampleNames differ between assayData and phenoData
GSVA
10 weeks ago by
Chris
▴ 280
5
votes
4
replies
448
views
Differential expression at pathway level
GSVA
updated 12 weeks ago by
AquaDeath
▴ 80 • written 12 weeks ago by
Chris
▴ 280
7
votes
12
replies
1.9k
views
Integrated genes from bulk RNA seq and ATAC seq
ATAC-seq
bulk-RNA
updated 3 months ago by
Ram
43k • written 12 months ago by
Chris
▴ 280
4
votes
11
replies
693
views
Remove X in row name with only number
GSVA
updated 3 months ago by
Ram
43k • written 3 months ago by
Chris
▴ 280
12
votes
20
replies
1.3k
views
Help with gatk BaseRecalibrator
GATK
variant-calling
updated 5 months ago by
Ram
43k • written 5 months ago by
Chris
▴ 280
6
votes
4
replies
2.1k
views
Methods to integrate ATAC-seq and RNA-seq
RNA-seq
ATAC-seq
updated 5 months ago by
Tao Zhu
▴ 10 • written 10 months ago by
Chris
▴ 280
2
votes
2
replies
436
views
Help with gatk CreateSequenceDictionary
GATK
updated 5 months ago by
GenoMax
142k • written 5 months ago by
Chris
▴ 280
2
votes
2
replies
1.1k
views
Help with scvelo
scvelo
updated 5 months ago by
Prakki Rama
★ 2.7k • written 7 months ago by
Chris
▴ 280
0
votes
0
replies
473
views
Help with cellchat error
cellchat
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 280
6
votes
10
replies
1.4k
views
Visualization of RNA-seq gene expression only one gene of interest between 2 conditions
RNA-seq
6 months ago by
Chris
▴ 280
1
vote
0
replies
251
views
Help with Enrichr clustergram
enrichr
7 months ago by
Chris
▴ 280
5
votes
7
replies
885
views
Novel disease mechanism papers from RNA-seq
RNA-seq
updated 7 months ago by
GenoMax
142k • written 7 months ago by
Chris
▴ 280
1
vote
7
replies
880
views
Ribosomal cluster
seurat
single-cell
7 months ago by
Chris
▴ 280
2
votes
4
replies
713
views
Can't find a gene in single cell
single-cell
7 months ago by
Chris
▴ 280
0
votes
0
replies
328
views
How to get RPKM from count matrix
RPKM
7 months ago by
Chris
▴ 280
3
votes
2
replies
736
views
Scvelo vs Monocle3
monocle3
scvelo
7 months ago by
Chris
▴ 280
1
vote
1
reply
521
views
Help with error velocyto
velocyto
7 months ago by
Chris
▴ 280
4
votes
10
replies
1.3k
views
Help with error running velocyto
velocyto
7 months ago by
Chris
▴ 280
3
votes
5
replies
1.2k
views
How to get the gft file to run velocyto for velocity analysis?
velocity
updated 4 months ago by
e.r.zakiev
▴ 210 • written 7 months ago by
Chris
▴ 280
3
votes
4
replies
904
views
Network analysis with cytoscape
RNA-seq
cytoscape
7 months ago by
Chris
▴ 280
14
votes
18
replies
2.3k
views
Clustering in single cell
seurat
single-cell
updated 6 months ago by
e.r.zakiev
▴ 210 • written 7 months ago by
Chris
▴ 280
2
votes
4
replies
708
views
Which function is best for pathway analysis?
pathway
7 months ago by
Chris
▴ 280
7
votes
7
replies
938
views
Filter human transcription factors
transcription-factor
RNA-seq
updated 7 months ago by
jared.andrews07
★ 16k • written 7 months ago by
Chris
▴ 280
10
votes
8
replies
1.1k
views
Adding a control sample to bulk RNA-seq
RNA-seq
7 months ago by
Chris
▴ 280
6
votes
8
replies
948
views
Find potential important genes from bulk-RNA seq experiment
RNA-seq
7 months ago by
Chris
▴ 280
2
votes
4
replies
710
views
Help with celltype annotation
seurat
single-cell
8 months ago by
Chris
▴ 280
0
votes
7
replies
1.2k
views
How to get top 10 genes expressed in a cluster ( for cell type identification)?
seurat
updated 6 months ago by
yhdist
▴ 70 • written 8 months ago by
Chris
▴ 280
0
votes
0
replies
322
views
Help with Mofa2
multiome
mofa2
updated 8 months ago by
Ram
43k • written 8 months ago by
Chris
▴ 280
1
vote
0
replies
291
views
Genes in open chromatin region
ATAC-seq
DiffBind
8 months ago by
Chris
▴ 280
0
votes
0
replies
376
views
R crash when running leiden algorithm
seurat
updated 8 months ago by
Ram
43k • written 8 months ago by
Chris
▴ 280
6
votes
6
replies
2.3k
views
Help with error scanpy
scanpy
updated 3 months ago by
sredemption
• 0 • written 8 months ago by
Chris
▴ 280
0
votes
0
replies
315
views
Help with scvi error
scvi
updated 8 months ago by
Ram
43k • written 8 months ago by
Chris
▴ 280
0
votes
0
replies
302
views
Help with single cell annotation
single-cell
updated 8 months ago by
Ram
43k • written 8 months ago by
Chris
▴ 280
8
votes
4
replies
1.2k
views
How to remove the gene label in heatmap RNA-seq
complexheatmap
8 months ago by
Chris
▴ 280
2
votes
3
replies
767
views
How to label only a few genes of interest in heatmap of bulk RNA-seq
RNA-seq
updated 8 months ago by
Ram
43k • written 8 months ago by
Chris
▴ 280
7
votes
13
replies
1.6k
views
Help with Error: Required version of NumPy not available: installation of Numpy >= 1.6 not found
seurat
leiden
8 months ago by
Chris
▴ 280
141 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6