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953
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Add Subscripts to labels in Seurat DimPlot
DimPlot ggplot2 Seurat RStudio
updated 17 months ago by ★ 3.1k • written 17 months ago by ▴ 50
0
votes
1
reply
636
views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
MSA substitution VCFstats Evolution VCF
updated 19 months ago by 166k • written 19 months ago by ▴ 50
3
votes
1
reply
1.2k
views
Using DADA2 for finding viral sequence variants
RNASeq Amplicon dada2 Variant
updated 2.1 years ago by 3.4k • written 2.1 years ago by ▴ 50
0
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0
replies
659
views
Compute Abundance counts for full-length Sequences?
abundance RNASeq Fasta Amplicon
2.3 years ago by Saran ▴ 50
3
votes
5
replies
2.9k
views
Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
Limma EdgeR Voom RNA-Seq RNA
updated 2.4 years ago by ★ 8.5k • written 2.4 years ago by ▴ 50
0
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0
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2.9k
views
Comment: Comment: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
2.4 years ago by Saran ▴ 50
1
vote
3
replies
1.5k
views
Count SNP per read
VCF SNP RNA-Seq MSA
updated 2.4 years ago by 8.1k • written 2.4 years ago by ▴ 50
1
vote
1
reply
841
views
Identifying Mutation Frequency Changes in MSAs over time?
Mutation Fasta MSA MutationRate RNA-Seq
updated 2.5 years ago by 4.8k • written 2.5 years ago by ▴ 50
1
vote
2
replies
1.4k
views
Flitering Genes in RNA-Seq causes more significant FDR Adjusted P-Val DEGs?
Limma RNA Voom EdgeR RNA-Seq
updated 2.5 years ago by 90k • written 2.5 years ago by ▴ 50
0
votes
0
replies
521
views
Differential Expression Analysis of single cell data with large difference in cell count for groups.
scRNA seurat DEG
2.7 years ago by Saran ▴ 50
3
votes
2
replies
1.2k
views
Cause of short sequences in Amplicon Sequencing?
Illumina ASV Amplicon DADA2
2.7 years ago by Saran ▴ 50
1
vote
1
reply
941
views
Visualize variants and percentage of variants from one sample of Amplicon Seq data?
Amplicon PCR RNAseq GATK BWA
updated 2.8 years ago by ★ 4.4k • written 2.8 years ago by ▴ 50
2
votes
1
reply
874
views
Find ASVs for Non-Microbial Data
Amplicon ASV PCR BWA VCF
updated 2.8 years ago by 3.9k • written 2.8 years ago by ▴ 50
0
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1
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3.5k
views
Comment: Comment: Error in reference fasta file when indexing with samtools
2.8 years ago by Saran ▴ 50
0
votes
0
replies
570
views
Display fraction of mutations and variants for Amplicon Sequencing sample?
PCR Amplicon VCF BWA
2.8 years ago by Saran ▴ 50
1
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0
replies
3.5k
views
Comment: Comment: Error in reference fasta file when indexing with samtools
2.8 years ago by Saran ▴ 50
0
votes
1
reply
3.5k
views
Comment: Comment: Error in reference fasta file when indexing with samtools
2.8 years ago by Saran ▴ 50
6
votes
7
replies
3.5k
views
Error in reference fasta file when indexing with samtools
samtools RNA-seq
updated 2.4 years ago by 45k • written 2.8 years ago by ▴ 50
0
votes
2
replies
1.1k
views
Is the RNA- sequencing quality too bad for analysis?
fastQC RNA PCR BWA minimap2
updated 2.9 years ago by 5.2k • written 2.9 years ago by ▴ 50
0
votes
0
replies
862
views
BWA-MEM : skip orientation FR as there are not enough pairs ?
PCR sequencing BWA illumina
2.9 years ago by Saran ▴ 50
0
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0
replies
1.5k
views
Comment: Comment: Align PCR-amplified sequences to two amplicons to get statistics of alignment?
2.9 years ago by Saran ▴ 50
0
votes
1
reply
1.5k
views
Comment: Comment: Align PCR-amplified sequences to two amplicons to get statistics of alignment?
2.9 years ago by Saran ▴ 50
1
vote
4
replies
1.5k
views
Align PCR-amplified sequences to two amplicons to get statistics of alignment?
PCR Alignment Amplicon
2.9 years ago by Saran ▴ 50
2
votes
4
replies
1.8k
views
Remove rRNA for RNA-Seq Analysis
rRNA RNA-Seq EdgeR
updated 3.0 years ago by 154k • written 3.0 years ago by ▴ 50
0
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0
replies
1.8k
views
Comment: Comment: Remove rRNA for RNA-Seq Analysis
3.0 years ago by Saran ▴ 50
0
votes
0
replies
2.8k
views
Comment: Comment: Multimapped reads in STAR alignment and subread::featureCounts()
3.0 years ago by Saran ▴ 50
4
votes
5
replies
2.8k
views
Multimapped reads in STAR alignment and subread::featureCounts()
Multimap STAR featureCounts alignment Rsubread
3.0 years ago by Saran ▴ 50
1
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1
reply
2.8k
views
Answer: Answer: Multimapped reads in STAR alignment and subread::featureCounts()
3.0 years ago by Saran ▴ 50
0
votes
0
replies
2.8k
views
Comment: Comment: Multimapped reads in STAR alignment and subread::featureCounts()
3.0 years ago by Saran ▴ 50
0
votes
0
replies
2.8k
views
Comment: Comment: Multimapped reads in STAR alignment and subread::featureCounts()
3.0 years ago by Saran ▴ 50
2
votes
1
reply
836
views
Why do all of my PCR reads not map to the reference sequence?
PCR sequencing BWA illumina
updated 3.0 years ago by 154k • written 3.0 years ago by ▴ 50
0
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1
reply
1.2k
views
Comment: Comment: What algorithm to use to align sequences of gene to reference gene and analyze v
3.1 years ago by Saran ▴ 50
0
votes
3
replies
1.2k
views
What algorithm to use to align sequences of gene to reference gene and analyze variants?
RNASeq 16S CRISPR Sequencing Fastq
updated 3.1 years ago by 154k • written 3.1 years ago by ▴ 50
1
vote
2
replies
2.6k
views
What do Over-represented Sequences mean in FastQC using RNA-Seq?
fastqc RNAseq trimmomatic adapters
updated 3.1 years ago by 103k • written 3.1 years ago by ▴ 50
34 results • Page 1 of 1
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