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2
votes
1
reply
317
views
How to extract certain lines from gff3 file?
gff3 gene_ids extract
updated 14 months ago by ▴ 30 • written 14 months ago by ▴ 230
0
votes
1
reply
13k
views
Comment: C: Extract gene coordinates from GTF
2.9 years ago by Kurban ▴ 230
0
votes
0
replies
4.3k
views
Comment: C: Modifying Fasta file header
2.9 years ago by Kurban ▴ 230
0
votes
1
reply
4.3k
views
Comment: C: Modifying Fasta file header
2.9 years ago by Kurban ▴ 230
3
votes
8
replies
8.5k
views
summarize SNPs and indels information in vcf file
snp
updated 17 months ago by 39k • written 8.8 years ago by ▴ 230
0
votes
1
reply
14k
views
Comment: Comment: Retrieving Fasta Sequence Using Uniprot Id
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 230
1
vote
0
replies
6.5k
views
Comment: Comment: Error with Trinity installation
updated 4 months ago by 39k • written 7.5 years ago by ▴ 230
0
votes
0
replies
3.1k
views
Comment: A: how do KOG classification and KEGG analysis based on nucleotide sequences?
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 230
0
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0
replies
8.5k
views
Comment: C: summarize SNPs and indels information in vcf file
updated 3.6 years ago by 39k • written 8.8 years ago by ▴ 230
0
votes
3
replies
2.0k
views
There any tools for gene regulation network visualizing?
TF-TG connection regulatory network
5.2 years ago by Kurban ▴ 230
0
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0
replies
4.7k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
6.2 years ago by Kurban ▴ 230
0
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1
reply
4.7k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
6.2 years ago by Kurban ▴ 230
0
votes
1
reply
4.7k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
6.2 years ago by Kurban ▴ 230
0
votes
1
reply
1.8k
views
Comment: C: How can I get DESeq2 heatmap result in tabular format?
6.2 years ago by Kurban ▴ 230
0
votes
3
replies
1.8k
views
How can I get DESeq2 heatmap result in tabular format?
RNA-Seq
updated 6.2 years ago by ★ 1.1k • written 6.2 years ago by ▴ 230
6
votes
8
replies
4.7k
views
How to cluster differential expressed genes from RNA-seq analysis?
RNA-Seq
6.2 years ago by Kurban ▴ 230
2
votes
2
replies
3.3k
views
align transcriptome to genome
alignment
updated 16 months ago by 39k • written 8.7 years ago by ▴ 230
0
votes
0
replies
874
views
About TF-TG files
alignment
6.5 years ago by Kurban ▴ 230
0
votes
0
replies
4.8k
views
Comment: Comment: Removing redundant sequences
updated 5 months ago by 39k • written 6.5 years ago by ▴ 230
0
votes
2
replies
1.9k
views
is there any source for TF(transcription factor)-TG(target gene)?
sequence
updated 6.5 years ago by ★ 3.6k • written 6.5 years ago by ▴ 230
1
vote
0
replies
5.4k
views
Comment: C: JASPAR motifs download
6.5 years ago by Kurban ▴ 230
0
votes
0
replies
2.0k
views
Comment: Comment: transcription factor database
updated 15 months ago by 39k • written 8.5 years ago by ▴ 230
0
votes
1
reply
1.3k
views
Blast unigenes with set of protein sequences
Blast unigenes with protein
6.9 years ago by Kurban ▴ 230
0
votes
0
replies
1.9k
views
Using MISA analyzing SSRs
By MISA analyzing SSRs
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 230
1
vote
2
replies
2.2k
views
About low temperature insect transcriptome KEGG passway results
transcriptome KEGG passway
7.0 years ago by Kurban ▴ 230
1
vote
1
reply
1.5k
views
Difference between NCBI mRNA sequences and RNA-seq assembled sequences
NCBI RNA-Seq mrna sequencing
updated 7.1 years ago by 5.1k • written 7.1 years ago by ▴ 230
4
votes
4
replies
2.6k
views
GFOLD value cutoff
GFOLD
updated 5 months ago by 39k • written 7.9 years ago by ▴ 230
0
votes
0
replies
1.8k
views
is there any tools for get Entrez id and gene symbol for multiple transcriptome sequences
Entrez id and gene symbol
7.2 years ago by Kurban ▴ 230
0
votes
0
replies
1.6k
views
about kog functional classification
kog functional classification
7.2 years ago by Kurban ▴ 230
1
vote
2
replies
2.1k
views
after blast with uniprot.fasta file, how could I get the output file which included all blasted protein's all sequence header
blast
updated 9 months ago by 39k • written 7.5 years ago by ▴ 230
0
votes
1
reply
2.8k
views
sequence annotation for gene name or gene symbol
gene-name ENTREZ_ID DAVID
updated 9 months ago by 39k • written 7.5 years ago by ▴ 230
0
votes
0
replies
6.5k
views
Comment: Comment: align transcripts to genome
updated 16 months ago by 39k • written 8.7 years ago by ▴ 230
2
votes
5
replies
6.5k
views
Error with Trinity installation
trinity
updated 4 months ago by 39k • written 8.0 years ago by ▴ 230
0
votes
0
replies
1.7k
views
how to do GOSlim-Generic
GOSlim-Generic
7.6 years ago by Kurban ▴ 230
1
vote
5
replies
3.1k
views
how do KOG classification and KEGG analysis based on nucleotide sequences?
KOG-classification
updated 8 months ago by 39k • written 7.7 years ago by ▴ 230
0
votes
1
reply
3.1k
views
Comment: A: how do KOG classification and KEGG analysis based on nucleotide sequences?
7.6 years ago by Kurban ▴ 230
0
votes
4
replies
4.7k
views
about blast2go problem
blast2go
updated 15 months ago by 39k • written 8.5 years ago by ▴ 230
0
votes
1
reply
2.0k
views
Comment: Comment: Fisher Exact Test For TFs family
updated 8 months ago by 39k • written 7.7 years ago by ▴ 230
3
votes
3
replies
2.0k
views
Fisher Exact Test For TFs family
Fishers-Exact-Test
updated 8 months ago by 39k • written 7.7 years ago by ▴ 230
0
votes
3
replies
1.8k
views
Prediction Transcription Factor Families
Transcription-Factor
updated 8 months ago by 39k • written 8.2 years ago by ▴ 230
0
votes
2
replies
1.9k
views
how to identify same protien sequences in one fasta file
fasta protien-sequences
updated 5 months ago by 39k • written 7.9 years ago by ▴ 230
3
votes
3
replies
1.9k
views
i got two different trinity.fasta by using two version of trinity
trinity
updated 5 months ago by 39k • written 8.0 years ago by ▴ 230
2
votes
2
replies
4.7k
views
can I get a heat map from two groups of transcriptome data?
heat map
updated 4 months ago by 39k • written 8.0 years ago by ▴ 230
0
votes
0
replies
6.5k
views
Comment: Comment: error with trinity installation
updated 4 months ago by 39k • written 8.0 years ago by ▴ 230
0
votes
1
reply
1.5k
views
how do I check the sequencing reads
reads
updated 3 months ago by 39k • written 8.0 years ago by ▴ 230
0
votes
0
replies
3.7k
views
Comment: Comment: how much cpu and RAM needed to assemble transcriptome by using trinity
updated 3 months ago by 39k • written 8.1 years ago by ▴ 230
1
vote
2
replies
3.7k
views
how much cpu and RAM needed to assemble transcriptome by using trinity
trinity
updated 3 months ago by 39k • written 8.1 years ago by ▴ 230
1
vote
0
replies
60k
views
Comment: Comment: Tools To Find Gene Ontology Term Enrichment
updated 11 months ago by 39k • written 8.1 years ago by ▴ 230
0
votes
1
reply
2.8k
views
Comment: C: can i align paired end reads and orphan reads to reference sequences at the same
updated 2.2 years ago by 39k • written 8.1 years ago by ▴ 230
0
votes
3
replies
2.8k
views
Can I align paired end reads and orphan reads to reference sequences at the same time
alignment
updated 11 months ago by 39k • written 8.1 years ago by ▴ 230
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