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2
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2.3k
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Answer: Answer: Venn Diagram and Heatmap with RNA seq Data
2.5 years ago by mccormack ▴ 90
2
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3
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2.5k
views
featureCounts with pseudobam
RNA-Seq pseudobam featureCounts kallisto Salmon
updated 4.0 years ago by 81k • written 7.3 years ago by ▴ 90
0
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0
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2.3k
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Comment: C: block design with time course and DESeq2
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 90
0
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0
replies
970
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Comment: C: Collapse rows of dataframe by AGI transcript numbers to AGI gene number
4.5 years ago by mccormack ▴ 90
5
votes
4
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970
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Collapse rows of dataframe by AGI transcript numbers to AGI gene number
R
updated 4.5 years ago by 11k • written 4.5 years ago by ▴ 90
0
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0
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9.9k
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Comment: C: How to extract bigWig signal for a given bed file?
5.4 years ago by mccormack ▴ 90
0
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1
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9.9k
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Comment: C: How to extract bigWig signal for a given bed file?
5.4 years ago by mccormack ▴ 90
0
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1
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5.2k
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Comment: C: DESeq2 results difference between use of lfcThreshold and sequential cutoffs.
5.8 years ago by mccormack ▴ 90
0
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1
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5.2k
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Comment: C: DESeq2 results difference between use of lfcThreshold and sequential cutoffs.
5.8 years ago by mccormack ▴ 90
3
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5
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5.2k
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DESeq2 results difference between use of lfcThreshold and sequential cutoffs.
DESeq2
updated 5.8 years ago by 21k • written 5.8 years ago by ▴ 90
0
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1
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2.1k
views
RNA seq analysis when many genes are differentially expressed
RNA-Seq DESeq2 EdgeR Cuffdiff
updated 6.1 years ago by 87k • written 6.1 years ago by ▴ 90
0
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1
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1.8k
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Comment: C: HTSeq special counters occur at top and bottom of output file
6.3 years ago by mccormack ▴ 90
0
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1
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1.8k
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Comment: C: HTSeq special counters occur at top and bottom of output file
6.3 years ago by mccormack ▴ 90
3
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8
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1.8k
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HTSeq special counters occur at top and bottom of output file
HTSeq
6.3 years ago by mccormack ▴ 90
0
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1
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1.8k
views
Comment: A: HTSeq special counters occur at top and bottom of output file
updated 6.3 years ago by 141k • written 6.3 years ago by ▴ 90
0
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1
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1.6k
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Comment: C: restricting module use in Perl script
7.0 years ago by mccormack ▴ 90
0
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1
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1.6k
views
Answer: A: restricting module use in Perl script
7.0 years ago by mccormack ▴ 90
2
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8
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1.6k
views
restricting module use in Perl script
sequence
7.0 years ago by mccormack ▴ 90
0
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1
reply
1.6k
views
Answer: A: restricting module use in Perl script
7.0 years ago by mccormack ▴ 90
0
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6
replies
2.0k
views
cluster and determine frequency of reads in fastq file
sequence alignment
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 90
0
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1
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2.0k
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Comment: C: cluster and determine frequency of reads in fastq file
7.4 years ago by mccormack ▴ 90
0
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1
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2.0k
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Comment: C: cluster and determine frequency of reads in fastq file
7.4 years ago by mccormack ▴ 90
0
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0
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2.3k
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Comment: C: cluster groups of values disregarding specific sequence of values
7.8 years ago by mccormack ▴ 90
9
votes
9
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2.3k
views
cluster groups of values disregarding specific sequence of values
clustering Perl Python bioconductor
7.8 years ago by mccormack ▴ 90
0
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1
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2.3k
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Comment: C: cluster groups of values disregarding specific sequence of values
7.8 years ago by mccormack ▴ 90
0
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2
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2.3k
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Comment: C: cluster groups of values disregarding specific sequence of values
7.8 years ago by mccormack ▴ 90
5
votes
4
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1.7k
views
simple explanation needed
DESeq2 HTSeq
updated 7.9 years ago by 104k • written 7.9 years ago by ▴ 90
1
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2
replies
2.3k
views
block design with time course and DESeq2
DESeq2 time-course block-design
updated 21 months ago by 43k • written 8.2 years ago by ▴ 90
0
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1
reply
2.0k
views
-nan for FPKM value in Cuffdiff output
RNA-Seq
updated 20 months ago by 43k • written 8.4 years ago by ▴ 90
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