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6
votes
19
replies
8.5k
views
Please help me with samtools
SAM samtools BAM bowtie2 alignment
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.9k
0
votes
0
replies
22k
views
Comment: C: Easy way to run easily orthoMCL (Copy & paste)
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
4.7k
views
Comment: C: RNa-seq RPKM data normalization for clustering
9.2 years ago by seta ★ 1.9k
0
votes
2
replies
4.7k
views
Answer: A: RNa-seq RPKM data normalization for clustering
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
8.2k
views
Comment: C: Please help with pheatmap in R
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
2.4k
views
Comment: C: SOAPdenovo trans min contig issue
9.2 years ago by seta ★ 1.9k
0
votes
5
replies
5.3k
views
Please help with comparing several gene ontology (GO) list
Gene ontology comparsion differential expression
updated 9.2 years ago by 7.6k • written 9.2 years ago by ★ 1.9k
0
votes
0
replies
5.3k
views
Comment: C: Please help with comparing several gene ontology (GO) list
9.2 years ago by seta ★ 1.9k
0
votes
1
reply
5.3k
views
Comment: C: Please help with comparing several gene ontology (GO) list
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
2.1k
views
Answer: A: Blast2GO basic CPU USE
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
2.0k
views
What are the advantages of domain homology search against KOG/COG database?
KOG/COG annotation domain homology search Blast
9.2 years ago by seta ★ 1.9k
0
votes
1
reply
2.6k
views
Comment: C: pathview run problem
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
1.5k
views
CEGMA analysis, core gene or protein?
CEGMA analysis core gene assembly
9.2 years ago by seta ★ 1.9k
0
votes
0
replies
4.9k
views
Comment: C: Getting all translated ORFs from 6 frame not just longest ones
9.2 years ago by seta ★ 1.9k
1
vote
0
replies
2.6k
views
Regarding dispersion estimation of RNA-seq data by edgeR software
dispersion estimation edgeR
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
5.2k
views
Comment: C: RNA-seq replicates pooled before sequencing. How to proceed with DGE analysis?
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.2k
views
Comment: C: Why there is the same GO term in the both up- and down-regulated gene set?
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.2k
views
Comment: C: Why there is the same GO term in the both up- and down-regulated gene set?
9.3 years ago by seta ★ 1.9k
2
votes
5
replies
3.2k
views
Why there is the same GO term in the both up- and down-regulated gene set?
differential expression analysis GO term RNA-seq
updated 9.3 years ago by 48k • written 9.3 years ago by ★ 1.9k
0
votes
1
reply
3.4k
views
Comment: C: Differentially expressed gene clustering
9.3 years ago by seta ★ 1.9k
2
votes
6
replies
3.4k
views
Differentially expressed gene clustering
differentially expressed gene clustering
updated 9.3 years ago by ★ 2.2k • written 9.3 years ago by ★ 1.9k
0
votes
0
replies
2.5k
views
Comment: C: Regarding differentially expressed genes analysis
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
2.5k
views
Comment: C: Regarding differentially expressed genes analysis
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
2.5k
views
Comment: C: Regarding differentially expressed genes analysis
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
2.5k
views
Comment: C: Regarding differentially expressed genes analysis
9.3 years ago by seta ★ 1.9k
3
votes
10
replies
2.5k
views
Regarding differentially expressed genes analysis
RNA-Seq differentially expressed genes clustering
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
2.5k
views
Comment: C: Regarding differentially expressed genes analysis
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
2.3k
views
Finding simple sequence repeat (SSR) markers for a specific disease
disease simple sequence repeat marker Ilumina
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
1.6k
views
Please help me with the issue on FPKM value calculation and validation of transcriptome assembly
FPKM assembly validation qRT-PCR
updated 9.3 years ago by 20 • written 9.5 years ago by ★ 1.9k
0
votes
0
replies
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.7k
views
Comment: C: Please help with connecting the part of the header in a fasta file with another
9.3 years ago by seta ★ 1.9k
0
votes
0
replies
7.0k
views
Comment: C: How to know the position of various transcripts of a given gene in the genomic s
9.3 years ago by seta ★ 1.9k
0
votes
1
reply
7.0k
views
Comment: C: How to know the position of various transcripts of a given gene in the genomic s
9.3 years ago by seta ★ 1.9k
6
votes
14
replies
7.0k
views
How to know the position of various transcripts of a given gene in the genomic sequence of that gene?
gene transcript sequence position
updated 9.3 years ago by 9.0k • written 9.3 years ago by ★ 1.9k
0
votes
0
replies
10k
views
Comment: C: How to map and visualize differentially expressed genes on KEGG pathways
9.4 years ago by seta ★ 1.9k
0
votes
0
replies
4.2k
views
Comment: C: ID conversion by BioMart
9.4 years ago by seta ★ 1.9k
2
votes
2
replies
4.2k
views
ID conversion by BioMart
ID conversion Ensembl
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by ★ 1.9k
0
votes
1
reply
7.7k
views
Comment: C: Gene ontology comparsion between up- and down-regulated genes
9.4 years ago by seta ★ 1.9k
0
votes
1
reply
7.7k
views
Comment: C: Gene ontology comparsion between up- and down-regulated genes
9.4 years ago by seta ★ 1.9k
0
votes
0
replies
4.7k
views
Comment: C: KEGG enrichment analysis by BINGO plugin of Cytoscape
9.4 years ago by seta ★ 1.9k
0
votes
1
reply
4.7k
views
Comment: C: KEGG enrichment analysis by BINGO plugin of Cytoscape
9.4 years ago by seta ★ 1.9k
0
votes
4
replies
4.7k
views
KEGG enrichment analysis by BINGO plugin of Cytoscape
differential expression KEGG enrichment analysis
9.4 years ago by seta ★ 1.9k
6
votes
6
replies
14k
views
How to remove poly T in RNA-sequencing data
RNA-Seq alignment Assembly sequencing
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
5
votes
3
replies
3.8k
views
The best factors to evaluate the quality of de novo transcriptome assembly
sequencing Assembly RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ★ 1.9k
1
vote
1
reply
2.7k
views
Please advise on primer designing for qRT-PCR analysis of Trinity transcripts
Trinity primer design qRT-PCR
updated 9.5 years ago by ▴ 480 • written 9.6 years ago by ★ 1.9k
868 results • Page 11 of 18
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