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0
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3
replies
8.9k
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Why there is a big difference for blastn and blastx results of a given sequence
blast alignment sequence
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by ★ 1.9k
0
votes
0
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3.9k
views
Comment: C: Venn diagram for annotation results
9.6 years ago by seta ★ 1.9k
0
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5
replies
3.9k
views
Venn diagram for annotation results
venn diagram blast annotation
updated 9.6 years ago by ★ 4.0k • written 9.6 years ago by ★ 1.9k
0
votes
0
replies
5.5k
views
Comment: C: blast against KOG database
9.6 years ago by seta ★ 1.9k
1
vote
2
replies
5.5k
views
blast against KOG database
blast alignment KOG annotation
updated 9.6 years ago by 8.9k • written 9.6 years ago by ★ 1.9k
0
votes
1
reply
3.0k
views
How to get required information from InterProscan results in xml format?
alignment InterProscan transcriptome
9.6 years ago by seta ★ 1.9k
0
votes
3
replies
3.8k
views
Mapping of a de novo assembled transcriptome to a genome of relative species
genome bowtie2 transcriptome-assembly alignment
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.9k
0
votes
1
reply
3.3k
views
Running Interproscan on the cluster
interproscan domain Pfam ProDomain
9.6 years ago by seta ★ 1.9k
1
vote
4
replies
3.5k
views
Re-naming just part of header in fasta file
fasta
updated 2.6 years ago by 45k • written 9.7 years ago by ★ 1.9k
0
votes
0
replies
3.5k
views
Comment: C: Re-naming just part of header in fasta file
9.7 years ago by seta ★ 1.9k
0
votes
0
replies
4.9k
views
Answer: A: BLAST a very large amount of data
9.7 years ago by seta ★ 1.9k
1
vote
0
replies
6.2k
views
Comment: C: Please help me with pyfasta
9.7 years ago by seta ★ 1.9k
1
vote
0
replies
4.6k
views
Comment: C: Plotting GO annotation results
9.7 years ago by seta ★ 1.9k
0
votes
1
reply
4.6k
views
Comment: C: Plotting GO annotation results
9.7 years ago by seta ★ 1.9k
0
votes
1
reply
4.6k
views
Comment: C: Plotting GO annotation results
9.7 years ago by seta ★ 1.9k
0
votes
1
reply
4.6k
views
Comment: C: Plotting GO annotation results
9.7 years ago by seta ★ 1.9k
0
votes
1
reply
4.6k
views
Comment: C: Plotting GO annotation results
9.7 years ago by seta ★ 1.9k
6
votes
12
replies
4.6k
views
Plotting GO annotation results
GO annotation transcriptome Plotting
updated 9.7 years ago by ★ 5.2k • written 9.7 years ago by ★ 1.9k
0
votes
1
reply
4.6k
views
Comment: C: Plotting GO annotation results
9.7 years ago by seta ★ 1.9k
0
votes
0
replies
4.1k
views
Pooling biological replicates and accuracy of differentially expressed genes analysis from RNA-seq experiment
gene-expression biological-replicates
updated 3.3 years ago by 45k • written 9.7 years ago by ★ 1.9k
0
votes
2
replies
2.9k
views
The best way to get the biologically meaningful interpretation from differentially expressed genes (DEG)
gene-ontology DEG transcriptome-assembly
updated 3.3 years ago by 45k • written 9.7 years ago by ★ 1.9k
0
votes
0
replies
2.2k
views
Comment: Comment: Access to HMMER software
updated 3.3 years ago by 45k • written 9.7 years ago by ★ 1.9k
1
vote
1
reply
2.1k
views
Please suggest a suitable tool for GO annotation of a plant de novo assembled transcriptome
GO-analysis annotation
updated 3.3 years ago by 45k • written 9.7 years ago by ★ 1.9k
1
vote
2
replies
3.8k
views
The most popular GO annotation tool
gene-ontology blastx transcriptome-assembly
updated 3.3 years ago by 45k • written 9.8 years ago by ★ 1.9k
0
votes
0
replies
2.1k
views
Uniquely mapped reads and differential expression analysis with Trinity
DEG-analysis Trinity mapping
updated 3.3 years ago by 45k • written 9.8 years ago by ★ 1.9k
6
votes
23
replies
10.0k
views
6 follow
blast execution in linux
alignment software-error next-gen blast
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
0
votes
0
replies
1.9k
views
Zero coverage regions from mapping back reads to the transcriptome assembly
mapping zero coverage transcriptome assembly
9.8 years ago by seta ★ 1.9k
1
vote
3
replies
5.2k
views
Contig length distribution plotting with R
contig length plotting R
updated 9.9 years ago by 35k • written 9.9 years ago by ★ 1.9k
10
votes
18
replies
19k
views
8 follow
Please help with removing spaces from fasta file
fasta
updated 2.6 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
0
replies
22k
views
Comment: C: How to check if there is any extra space or blank line in the fasta file?
9.9 years ago by seta ★ 1.9k
7
votes
18
replies
22k
views
How to check if there is any extra space or blank line in the fasta file?
fasta
updated 2.6 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
0
replies
4.5k
views
Comment: C: Please help me with bowtie2 output and samtools report
9.9 years ago by seta ★ 1.9k
0
votes
0
replies
5.1k
views
Comment: C: KOG functional annotation
9.9 years ago by seta ★ 1.9k
0
votes
4
replies
4.5k
views
Please help me with bowtie2 output and samtools report
bowtie2 samtools flagstat alignment
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
0
replies
3.3k
views
Comment: C: hit length in the tabular blast output
9.9 years ago by seta ★ 1.9k
0
votes
4
replies
3.3k
views
hit length in the tabular blast output
blast hit length tabular output
updated 9.9 years ago by 11k • written 9.9 years ago by ★ 1.9k
1
vote
1
reply
5.1k
views
KOG functional annotation
RNA-Seq KOG annotation blast
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
0
replies
2.0k
views
evaluation of accuracy and sensitivity of the de novo transcriptome assembly
accuracy transcriptome-assembly alignment
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
0
replies
2.5k
views
Comment: C: Regarding fasta file format
9.9 years ago by seta ★ 1.9k
0
votes
1
reply
2.5k
views
Comment: C: Regarding fasta file format
9.9 years ago by seta ★ 1.9k
6
votes
5
replies
2.5k
views
Regarding fasta file format
fasta
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
1
reply
2.3k
views
How many reads used by a assembler for transcriptome assembly
transcriptome-assembly RNA-seq
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
1
reply
6.3k
views
Comment: C: Is it necessary to confirm the RNA-seq results by quantitative RT-PCR?
9.9 years ago by seta ★ 1.9k
0
votes
1
reply
2.6k
views
Comment: C: How to concatenate multiple blastx output file in a way that all the hits from o
9.9 years ago by seta ★ 1.9k
0
votes
5
replies
2.6k
views
How to concatenate multiple blastx output file in a way that all the hits from one query goes together as a "block"?
alinbment sequencing blast
updated 3.3 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
0
replies
2.1k
views
Transcriptome assembly improvement with Soap-denovo trans
contig soap-denovo-trans assembly RNA-seq
updated 3.2 years ago by 45k • written 9.9 years ago by ★ 1.9k
0
votes
1
reply
2.2k
views
Answer: A: de novo transcriptome assembly
9.9 years ago by seta ★ 1.9k
0
votes
1
reply
11k
views
Comment: C: What is wrong here with bbmap and java
9.9 years ago by seta ★ 1.9k
0
votes
2
replies
11k
views
Comment: C: What is wrong here with bbmap and java
9.9 years ago by seta ★ 1.9k
0
votes
1
reply
11k
views
Comment: C: What is wrong here with bbmap and java
9.9 years ago by seta ★ 1.9k
868 results • Page 12 of 18
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