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Comment: C: miRNA-seq pipeline in biostar handbook?
7.9 years ago by seta ★ 1.9k
1
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2
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1.9k
views
miRNA-seq pipeline in biostar handbook?
miRNA-seq Biostar handbook
updated 7.9 years ago by 103k • written 7.9 years ago by ★ 1.9k
6
votes
9
replies
12k
views
Issue with installing bowtie2
bowtie2 installing error
updated 8.1 years ago by ▴ 310 • written 8.8 years ago by ★ 1.9k
0
votes
10
replies
5.1k
views
Issue with bowtie2-align during installation of bowtie2
bowtie2 bowtie2-align installation
updated 8.1 years ago by ▴ 310 • written 8.8 years ago by ★ 1.9k
0
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5
replies
3.0k
views
Regarding TMM normalization before DEG analysis by DEGseq
TMM DEGseq DEG analysis
updated 8.2 years ago by ★ 1.2k • written 8.2 years ago by ★ 1.9k
0
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0
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3.0k
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Comment: C: Regarding TMM normalization before DEG analysis by DEGseq
8.2 years ago by seta ★ 1.9k
0
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1
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3.0k
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Comment: C: Regarding TMM normalization before DEG analysis by DEGseq
8.2 years ago by seta ★ 1.9k
2
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5
replies
8.9k
views
Getting FPKM value from edgeR software
edgeR FPKM value error
updated 8.3 years ago by 20 • written 9.1 years ago by ★ 1.9k
0
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0
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1.5k
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Comment: C: The same results with various dataset by cufflinks
8.4 years ago by seta ★ 1.9k
0
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2
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1.5k
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The same results with various dataset by cufflinks
mapping alignment assembly cufflinks
8.4 years ago by seta ★ 1.9k
0
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0
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1.7k
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Comment: C: inner and outer genomic coordinates concept
8.4 years ago by seta ★ 1.9k
1
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1
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1.7k
views
Comment: C: inner and outer genomic coordinates concept
8.4 years ago by seta ★ 1.9k
1
vote
4
replies
1.7k
views
inner and outer genomic coordinates concept
genome alignment coordinate outer
updated 8.4 years ago by 35k • written 8.4 years ago by ★ 1.9k
1
vote
1
reply
1.7k
views
Please help me with the fate of multimapping reads in the RNA-seq context
RNA-Seq multimapping
8.4 years ago by seta ★ 1.9k
3
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6
replies
6.2k
views
Please help me with pyfasta
fasta pyfasta
updated 2.6 years ago by 45k • written 9.7 years ago by ★ 1.9k
0
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1
reply
2.6k
views
Issue with gffread during converting gtf file to fasta
fasta gtf gffread
updated 2.6 years ago by 45k • written 8.5 years ago by ★ 1.9k
0
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1
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3.9k
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Comment: C: FastX Collapser and duplicate removal
8.5 years ago by seta ★ 1.9k
0
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3
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3.9k
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FastX Collapser and duplicate removal
ngs read duplicate Fastx collapser
8.5 years ago by seta ★ 1.9k
0
votes
1
reply
2.4k
views
Sliding window in Trimmomatic and PrinSeq
trimming sliding window
8.5 years ago by seta ★ 1.9k
0
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0
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8.8k
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Comment: C: Read trimming with BBDuk
8.5 years ago by seta ★ 1.9k
0
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1
reply
8.8k
views
Comment: C: Read trimming with BBDuk
updated 8.5 years ago by 154k • written 8.5 years ago by ★ 1.9k
1
vote
2
replies
3.5k
views
Command to estimate how long local blastx take to finish the job?
blast RNA-Seq alignment
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
0
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0
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2.0k
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Comment: C: Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
8.6 years ago by seta ★ 1.9k
0
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2
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2.0k
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Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
NEBNex kit Illumina Fastqc adapter length
8.6 years ago by seta ★ 1.9k
0
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1
reply
5.7k
views
Comment: C: Modification of fastq header
8.6 years ago by seta ★ 1.9k
0
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0
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5.7k
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Comment: C: Modification of fastq header
8.6 years ago by seta ★ 1.9k
1
vote
9
replies
5.7k
views
Modification of fastq header
header fastq read modification
updated 8.6 years ago by ★ 2.9k • written 8.6 years ago by ★ 1.9k
0
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1
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5.7k
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Comment: C: Modification of fastq header
8.6 years ago by seta ★ 1.9k
0
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1
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5.7k
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Comment: C: Modification of fastq header
8.6 years ago by seta ★ 1.9k
0
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0
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1.6k
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QIEA and CRO algorithms for assembly of sequencing reads produced by NGS technology
algorithm assembly reads NGS
8.6 years ago by seta ★ 1.9k
0
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0
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1.9k
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adding tss_id and p_id to GTF file by cuffdiff_gtf_attributes
cuffdiff RNA-seq GTF
updated 2.6 years ago by 45k • written 8.6 years ago by ★ 1.9k
1
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0
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3.9k
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Comment: C: Extracting fasta sequences with identical header
8.6 years ago by seta ★ 1.9k
6
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7
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3.9k
views
Extracting fasta sequences with identical header
fasta extracting identical header
updated 8.6 years ago by 20k • written 8.6 years ago by ★ 1.9k
0
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1
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3.9k
views
Comment: C: Extracting fasta sequences with identical header
8.6 years ago by seta ★ 1.9k
0
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1
reply
2.4k
views
Comment: C: SSR marker discovery from RNA-seq data when a reference genome is available
8.6 years ago by seta ★ 1.9k
0
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0
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2.4k
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Comment: C: SSR marker discovery from RNA-seq data when a reference genome is available
8.6 years ago by seta ★ 1.9k
0
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1
reply
2.4k
views
Comment: C: SSR marker discovery from RNA-seq data when a reference genome is available
8.6 years ago by seta ★ 1.9k
0
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7
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2.4k
views
SSR marker discovery from RNA-seq data when a reference genome is available
SSR RNA-se genome alignment
8.7 years ago by seta ★ 1.9k
0
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0
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2.0k
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Comment: C: SSR marker discovery from BAM/SAM input file
8.7 years ago by seta ★ 1.9k
0
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2
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2.0k
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SSR marker discovery from BAM/SAM input file
BAM genome alignment simple sequence repeat
8.7 years ago by seta ★ 1.9k
0
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3
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11k
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Answer: A: fasta seq header
8.7 years ago by seta ★ 1.9k
1
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4
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3.4k
views
How do you find ballgown package for differential expression analysis?
differential expression ballgown
8.7 years ago by seta ★ 1.9k
0
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1
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3.4k
views
Comment: C: How you find ballgown package for differential expression analysis?
8.7 years ago by seta ★ 1.9k
0
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0
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5.9k
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Comment: C: Please adivse me on differential expression analysis on the STAR/Stringtie outpu
8.7 years ago by seta ★ 1.9k
0
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1
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5.9k
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Comment: C: Please adivse me on differential expression analysis on the STAR/Stringtie outpu
8.7 years ago by seta ★ 1.9k
0
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1
reply
2.9k
views
Comment: C: An odd error with StringTie!!
8.8 years ago by seta ★ 1.9k
0
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1
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2.9k
views
Comment: C: An odd error with StringTie!!
8.8 years ago by seta ★ 1.9k
0
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1
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2.9k
views
Comment: C: An odd error with StringTie!!
8.8 years ago by seta ★ 1.9k
0
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8
replies
2.9k
views
An odd error with StringTie!!
stringtie rnaseq error
updated 8.8 years ago by 105k • written 8.8 years ago by ★ 1.9k
0
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1
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5.0k
views
Comment: C: The right pipline with cufflinks, cuffmerge and cuffdiff
8.8 years ago by seta ★ 1.9k
868 results • Page 9 of 18
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