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377
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Which are the best Cell - Cell communication packages for single cell RNASeq timeseries data?
R scrna seurat
19 months ago by AB ▴ 360
1
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0
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629
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Answer: Answer: Identifying DEG's on Integrated samples
19 months ago by AB ▴ 360
7
votes
3
replies
2.7k
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Extending and clipping bed files
ChIP-Seq bedtools
updated 2.1 years ago by • 0 • written 7.6 years ago by ▴ 360
0
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4
replies
2.9k
views
Database of mouse ligand receptors
ligand-receptor database mm9
updated 2.6 years ago by • 0 • written 6.6 years ago by ▴ 360
2
votes
1
reply
2.9k
views
results from SNPSift Concordance
SNPSift concordance snp
updated 2.7 years ago by • 0 • written 7.0 years ago by ▴ 360
1
vote
3
replies
2.6k
views
Error :[[<- defined for objects of type "S4" only for subclasses of environment - Shiny App error
shiny Seurat single cell RNASeq
3.3 years ago by AB ▴ 360
1
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0
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2.6k
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Answer: A: Error :[[<- defined for objects of type "S4" only for subclasses of environment
3.3 years ago by AB ▴ 360
0
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0
replies
3.1k
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Answer: A: Shiny board with seurat object
3.3 years ago by AB ▴ 360
0
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0
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2.6k
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Comment: C: Error :[[<- defined for objects of type "S4" only for subclasses of environment
3.3 years ago by AB ▴ 360
3
votes
2
replies
5.2k
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Error when using Bedtools fisher on sorted bed files
ChIP-Seq bedtools fisher test
updated 3.4 years ago by ▴ 150 • written 8.2 years ago by ▴ 360
1
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0
replies
1.2k
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Comment: C: Aligning multiple runs using STARSolo
3.4 years ago by AB ▴ 360
3
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2
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1.2k
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Aligning multiple runs using STARSolo
single cell RNASeq scRNA STARSolo STAR Alignment
updated 3.4 years ago by 82k • written 3.4 years ago by ▴ 360
0
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3
replies
1.7k
views
sratoolkit prefetch command returns no result
sratoolkit
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 360
0
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0
replies
1.7k
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Answer: A: sratoolkit prefetch command returns no result
3.5 years ago by AB ▴ 360
0
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0
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1.7k
views
Comment: C: sratoolkit prefetch command returns no result
3.5 years ago by AB ▴ 360
2
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1
reply
3.8k
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Downloading single cell RNASeq data using SRA
single-cell-RNASeq sratoolkit
updated 10 months ago by 43k • written 3.6 years ago by ▴ 360
0
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1
reply
978
views
Identifying appearance or disappearance of cell populations between WT and Mut single cell RNA-Seq data
single cell RNA-Seq Seurat
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 360
0
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1
reply
3.3k
views
Comment: C: Differential binding analysis of motif-containing peaks
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 360
0
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0
replies
4.3k
views
Comment: C: Correcting batch effects between RPKM datasets?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 360
0
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0
replies
20k
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Answer: A: Label Clusters in Seurat
4.7 years ago by AB ▴ 360
2
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0
replies
3.3k
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Answer: A: Remove duplicate genes with lower significance in microarray data analysis
4.7 years ago by AB ▴ 360
1
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1
reply
3.5k
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Answer: A: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
4.9 years ago by AB ▴ 360
2
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1
reply
1.7k
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Answer: A: how to make input data R packge limma
4.9 years ago by AB ▴ 360
1
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0
replies
8.2k
views
Answer: A: Saving 3D plot from rgl as a pdf
5.0 years ago by AB ▴ 360
3
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3
replies
8.2k
views
Saving 3D plot from rgl as a pdf
rgl 3dplot
5.0 years ago by AB ▴ 360
3
votes
8
replies
11k
views
converting vcf to text file
vcf eqtl Matrix EQTL
updated 5.2 years ago by 20 • written 6.5 years ago by ▴ 360
0
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1
reply
1.4k
views
Count empty rows in Rhandsontable
rhandsontable shiny
5.5 years ago by AB ▴ 360
3
votes
6
replies
4.4k
views
Error while running pfamscan.pl : Unable to translate nucleotide sequences to protein sequences
RNA-Seq PfamScan lincRNA
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 360
0
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1
reply
4.4k
views
Comment: C: Error while running pfamscan.pl : Unable to translate nucleotide sequences to pr
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 360
0
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1
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4.4k
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Comment: C: Error while running pfamscan.pl : Unable to translate nucleotide sequences to pr
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 360
0
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1
reply
1.3k
views
Error displaying GTEX like boxplot in UCSC Genome Browser - "Error creating boxplot from sample data"
ucsc genomebrowser boxplot GTEx Barcharts
5.6 years ago by AB ▴ 360
0
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0
replies
1.3k
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Answer: C: Error displaying GTEX like boxplot in UCSC Genome Browser
5.6 years ago by AB ▴ 360
0
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0
replies
3.9k
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Answer: A: how to do TSNEPlot which differentiate the sample and cluster at the same time i
5.6 years ago by AB ▴ 360
6
votes
0
replies
4.6k
views
Answer: A: Converting narrowpeak files to make it compatible with UCSC trackhub
updated 5.7 years ago by 141k • written 5.7 years ago by ▴ 360
8
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1
reply
4.6k
views
Converting narrowpeak files to make it compatible with UCSC trackhub
ucsc genomebrowser narrowpeakfile ucscutilites
5.7 years ago by AB ▴ 360
1
vote
2
replies
4.3k
views
Classify cells using seurat
scRNA seurat monocle
updated 5.9 years ago by ▴ 110 • written 6.2 years ago by ▴ 360
1
vote
0
replies
3.4k
views
Answer: A: KEGGREST: how to retrieve compound list by pathway ID
6.1 years ago by AB ▴ 360
0
votes
1
reply
2.2k
views
Answer: A: How to extract PRDM9 binding motifs in bed format?
6.1 years ago by AB ▴ 360
1
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0
replies
2.8k
views
Answer: A: Protein-protein Docking Software?
6.1 years ago by AB ▴ 360
6
votes
3
replies
5.6k
views
Log transformation of RPKM data for PCA analysis
RNA-Seq rpkm PCA log-transformation
updated 20 months ago by 43k • written 8.5 years ago by ▴ 360
2
votes
2
replies
4.8k
views
Vcf-compare two multi-sample vcf files
vcf-compare vcftools
updated 6.3 years ago by ▴ 10 • written 7.0 years ago by ▴ 360
0
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0
replies
11k
views
Answer: C: converting vcf to text file
6.5 years ago by AB ▴ 360
0
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2
replies
11k
views
Comment: C: converting vcf to text file
updated 6.5 years ago by 161k • written 6.5 years ago by ▴ 360
6
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6
replies
2.8k
views
UCSC Fasta files by chromosome for rn6
ucsc fasta rn6
updated 6.5 years ago by ▴ 580 • written 6.5 years ago by ▴ 360
0
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0
replies
2.8k
views
Comment: C: UCSC Fasta files by chromosome for rn6
6.5 years ago by AB ▴ 360
3
votes
3
replies
3.0k
views
running multiple RSeQC jobs
RNA-Seq RSeQC tin.py
updated 6.7 years ago by 20 • written 6.9 years ago by ▴ 360
1
vote
1
reply
5.7k
views
Comment: C: How to increase point size or color palette of a PCA plot using the scater packa
6.8 years ago by AB ▴ 360
2
votes
3
replies
5.7k
views
How to increase point size or color palette of a PCA plot using the scater package for scRNA analysis
scater plotPCA
6.8 years ago by AB ▴ 360
0
votes
0
replies
1.1k
views
Going from Snps to exons to protein domains
snps proteindomains variant Effect Predictor
7.0 years ago by AB ▴ 360
1
vote
1
reply
1.9k
views
Answer: A: NGS data analysis
7.0 years ago by AB ▴ 360
74 results • Page 1 of 2
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