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0
votes
2
replies
3.4k
views
Merging integrated datasets
single-cell RNA-Seq
Seurat
R
integration
3.7 years ago by
firestar
★ 1.6k
0
votes
0
replies
4.8k
views
Comment:
C: 10x to cloupe
3.8 years ago by
firestar
★ 1.6k
48
votes
15
replies
17k
views
10 follow
DESeq2 compare all levels
differential-gene-expression
RNA-Seq
DESeq2
updated 6 months ago by
Bionaught
• 0 • written 6.3 years ago by
firestar
★ 1.6k
1
vote
0
replies
1.0k
views
Comment:
C: Evaluate genome annotation quality
4.1 years ago by
firestar
★ 1.6k
1
vote
2
replies
1.0k
views
Evaluate genome annotation quality
annotation
genome
updated 4.1 years ago by
hugo.avila
▴ 530 • written 4.1 years ago by
firestar
★ 1.6k
3
votes
1
reply
2.1k
views
RNA Seq: Differential expression model formula
RNA-Seq
R
DESeq
edgeR
updated 4.6 years ago by
Biostar
20 • written 8.3 years ago by
firestar
★ 1.6k
5
votes
3
replies
5.1k
views
RNA velocity plot demystified
rna-velocity
velocyto
single-cell
updated 4.6 years ago by
dchatterjee
▴ 30 • written 4.7 years ago by
firestar
★ 1.6k
0
votes
0
replies
5.1k
views
Comment:
C: RNA velocity plot demystified
4.7 years ago by
firestar
★ 1.6k
0
votes
1
reply
6.4k
views
Moving data from Seurat to ScanPy
seurat
scanpy
single-cell
R
python
updated 4.7 years ago by
khorms
▴ 230 • written 4.7 years ago by
firestar
★ 1.6k
0
votes
0
replies
5.8k
views
Answer:
A: how to create a minimun spanning tree with R
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
firestar
★ 1.6k
2
votes
3
replies
1.8k
views
Downstream applications of Differential transcript expression
RNA-Seq
updated 4.9 years ago by
Biostar
20 • written 7.2 years ago by
firestar
★ 1.6k
4
votes
3
replies
7.6k
views
Loading PLINK files to Haploview
plink
haploview
SNP
updated 3.0 years ago by
Nai
▴ 50 • written 6.7 years ago by
firestar
★ 1.6k
0
votes
1
reply
2.0k
views
Variant calling pacbio bacteria
pacbio
variant-calling
bacteria
sniffles
pbsv
updated 5.0 years ago by
Billy Rowell
▴ 330 • written 5.2 years ago by
firestar
★ 1.6k
1
vote
1
reply
2.2k
views
Converting bax.h5 to CCS reads
pacbio
5.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
6.7k
views
Comment:
C: Fixing batch effect with seurat integrate
5.2 years ago by
firestar
★ 1.6k
1
vote
3
replies
6.7k
views
Fixing batch effect with seurat integrate
scrna.seq
seurat
single-cell
5.2 years ago by
firestar
★ 1.6k
28
votes
30
replies
7.7k
views
6 follow
Similarity between two FASTA files
similarity
distance
updated 5.3 years ago by
Biostar
20 • written 6.2 years ago by
firestar
★ 1.6k
4
votes
0
replies
5.5k
views
Answer:
C: UMAP interpretation in scRNA-seq analysis
5.4 years ago by
firestar
★ 1.6k
0
votes
1
reply
2.2k
views
Applications of TPM normalisation
RNA-Seq
deseq2
normalisation
dge
5.4 years ago by
firestar
★ 1.6k
0
votes
0
replies
1.4k
views
Model selection for differential expression
RNA-Seq
methylation
limma
differential expression
5.5 years ago by
firestar
★ 1.6k
0
votes
0
replies
4.2k
views
Answer:
A: M Value from Non-Normalized Methylated and Unmethylated Signal 450k
5.6 years ago by
firestar
★ 1.6k
0
votes
0
replies
21k
views
Comment:
C: bwa mem: Passing a variable to read group
5.6 years ago by
firestar
★ 1.6k
7
votes
2
replies
3.5k
views
Multiple sequence alignment and visualisation for bacterial genomes
bacteria
alignment
MSA
sequencing
genome
5.6 years ago by
firestar
★ 1.6k
0
votes
0
replies
10k
views
Comment:
C: Command line tool for translated multifasta nucleotide to aminoacid sequence
5.6 years ago by
firestar
★ 1.6k
4
votes
5
replies
4.3k
views
Median coverage from BAM file
coverage
DNA-Seq
5.6 years ago by
firestar
★ 1.6k
4
votes
1
reply
3.2k
views
PacBio merge runs
pacbio
assembly
5.8 years ago by
firestar
★ 1.6k
2
votes
0
replies
3.2k
views
Answer:
A: PacBio merge runs
5.8 years ago by
firestar
★ 1.6k
0
votes
1
reply
1.2k
views
Comment:
C: Fasta length does not match Ensembl info
5.8 years ago by
firestar
★ 1.6k
0
votes
0
replies
3.4k
views
Comment:
C: Arrow Assembly polishing Error "KeyError: 'BASECALLERVERSION'"
5.8 years ago by
firestar
★ 1.6k
1
vote
0
replies
25k
views
Comment:
C: LD-decay in a r2 vs distance(cm) plot
5.9 years ago by
firestar
★ 1.6k
32
votes
4
replies
8.5k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 18 months ago by
Ram
44k • written 5.9 years ago by
firestar
★ 1.6k
1
vote
0
replies
25k
views
Comment:
C: LD-decay in a r2 vs distance(cm) plot
5.9 years ago by
firestar
★ 1.6k
0
votes
0
replies
1.2k
views
Comment:
C: Fasta length does not match Ensembl info
6.0 years ago by
firestar
★ 1.6k
1
vote
5
replies
1.2k
views
Fasta length does not match Ensembl info
annotation
fasta
updated 6.0 years ago by
Nicolas Rosewick
11k • written 6.0 years ago by
firestar
★ 1.6k
0
votes
0
replies
21k
views
Comment:
C: bwa mem: Passing a variable to read group
6.0 years ago by
firestar
★ 1.6k
0
votes
1
reply
1.4k
views
Mauve export similarity
multiple-sequence-alignment
mauve
updated 16 months ago by
Ram
44k • written 6.2 years ago by
firestar
★ 1.6k
0
votes
0
replies
9.5k
views
Comment:
C: Data for drawing Heatmaps (RNA-seq)
6.0 years ago by
firestar
★ 1.6k
3
votes
1
reply
1.9k
views
Removing reads from fastq file based on position
RNA-Seq
next-gen-sequencing
updated 2.2 years ago by
Ram
44k • written 8.6 years ago by
firestar
★ 1.6k
9
votes
1
reply
42k
views
Comment:
C: Raw counts to TPM in R
updated 6.1 years ago by
Ram
44k • written 6.1 years ago by
firestar
★ 1.6k
33
votes
4
replies
42k
views
Raw counts to TPM in R
RNA-Seq
R
updated 3 months ago by
ATpoint
84k • written 6.1 years ago by
firestar
★ 1.6k
1
vote
1
reply
7.7k
views
Comment:
C: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
7.7k
views
Comment:
C: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
7.7k
views
Comment:
C: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
3
votes
2
replies
7.7k
views
Answer:
A: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
0
votes
3
replies
7.7k
views
Comment:
C: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
7.7k
views
Comment:
C: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
7.7k
views
Comment:
C: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
1
vote
1
reply
7.7k
views
Comment:
A: Similarity between two FASTA files
6.2 years ago by
firestar
★ 1.6k
2
votes
0
replies
27k
views
Comment:
C: Alignment and mapping
6.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
1.8k
views
Comment:
C: RNA-Seq identify stably expressed genes
6.5 years ago by
firestar
★ 1.6k
187 results • Page
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