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22
votes
14
replies
27k
views
11 follow
searching reads with a certain sequence in fastq file
grep fastq
updated 22 months ago by • 0 • written 10.1 years ago by ▴ 140
10
votes
9
replies
9.9k
views
comparing two fastq files
next-gen sequencing
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 140
3
votes
1
reply
2.8k
views
reporting the best alignment(s) only in pairwise2
alignment next-gen-sequencing
updated 2.4 years ago by 45k • written 9.9 years ago by ▴ 140
1
vote
2
replies
1.2k
views
maftools - no chromosomal coordinates
R SNP Bioconductor
updated 6.6 years ago by 20 • written 6.8 years ago by ▴ 140
1
vote
1
reply
3.2k
views
converting log-odds ratio to p-value in HOMER
ChIP-Seq
7.1 years ago by sumithrasank75 ▴ 140
3
votes
2
replies
1.5k
views
Identify TF binding sites genomewide
sequence next-gen genome
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 140
0
votes
2
replies
2.7k
views
getting a list of alignment with a particular bam tag from a bam file
alignment
updated 7.3 years ago by 166k • written 7.3 years ago by ▴ 140
0
votes
1
reply
6.9k
views
understanding bamtobed output
alignment
updated 7.3 years ago by 20 • written 8.9 years ago by ▴ 140
3
votes
3
replies
3.8k
views
parsing fastq files in python
next-gen
updated 7.5 years ago by 5.9k • written 7.5 years ago by ▴ 140
0
votes
0
replies
1.2k
views
Using monocle on dge file
next-gen RNA-Seq
7.9 years ago by sumithrasank75 ▴ 140
3
votes
5
replies
7.4k
views
heatmap using DESeq2
RNA-Seq
updated 8.0 years ago by 21k • written 8.0 years ago by ▴ 140
0
votes
1
reply
1.7k
views
Comment: C: genes close to random genomic locations
8.2 years ago by sumithrasank75 ▴ 140
3
votes
4
replies
1.7k
views
genes close to random genomic locations
gene
8.3 years ago by sumithrasank75 ▴ 140
1
vote
2
replies
2.3k
views
string search in fastq file
sequencing
updated 8.4 years ago by 36k • written 8.4 years ago by ▴ 140
0
votes
0
replies
6.0k
views
Comment: C: searching for sequences in a fastq file
8.8 years ago by sumithrasank75 ▴ 140
2
votes
1
reply
1.7k
views
iterating through 2 fastq files and changing read_id in one of them
next-gen
updated 8.8 years ago by 48k • written 8.8 years ago by ▴ 140
0
votes
1
reply
6.0k
views
Comment: C: searching for sequences in a fastq file
8.8 years ago by sumithrasank75 ▴ 140
5
votes
6
replies
6.0k
views
searching for sequences in a fastq file
next-gen
updated 8.8 years ago by 48k • written 8.8 years ago by ▴ 140
7
votes
5
replies
8.1k
views
extracting reads from fastq file based on read_id
next-gen
updated 8.9 years ago by ★ 2.9k • written 8.9 years ago by ▴ 140
2
votes
5
replies
2.1k
views
getting reads counts at RefSeq genes
alignment gene
updated 8.9 years ago by ★ 2.3k • written 8.9 years ago by ▴ 140
5
votes
7
replies
2.5k
views
choosing reads from a fastq file based on another fastq file
next-gen
updated 8.9 years ago by 166k • written 8.9 years ago by ▴ 140
0
votes
1
reply
2.5k
views
Comment: C: choosing reads from a fastq file based on another fastq file
8.9 years ago by sumithrasank75 ▴ 140
0
votes
1
reply
5.8k
views
parsing a fastq file using biopython
next-gen
updated 8.9 years ago by 6.2k • written 8.9 years ago by ▴ 140
4
votes
3
replies
3.2k
views
Statistical testing for differential expression in DESeq
RNA-Seq next-gen
updated 9.5 years ago by 105k • written 9.5 years ago by ▴ 140
2
votes
4
replies
2.1k
views
filtering reads based on read counts
next-gen R
updated 2.3 years ago by 45k • written 10.1 years ago by ▴ 140
0
votes
1
reply
9.9k
views
Comment: C: comparing two fastq files
9.9 years ago by sumithrasank75 ▴ 140
0
votes
0
replies
9.9k
views
Comment: C: comparing two fastq files
9.9 years ago by sumithrasank75 ▴ 140
4
votes
9
replies
5.7k
views
greping unique reads from fastq file
sequencing next-gen
updated 2.4 years ago by 45k • written 9.9 years ago by ▴ 140
0
votes
0
replies
5.7k
views
Comment: Comment: greping unique reads from fastq file
updated 2.4 years ago by 45k • written 9.9 years ago by ▴ 140
0
votes
0
replies
5.7k
views
Comment: C: greping unique reads from fastq file
9.9 years ago by sumithrasank75 ▴ 140
0
votes
2
replies
5.7k
views
Comment: Comment: greping unique reads from fastq file
updated 2.4 years ago by 45k • written 9.9 years ago by ▴ 140
1
vote
2
replies
2.8k
views
bowtie reporting reads that did not align
next-gen alignment
updated 2.4 years ago by 45k • written 10.0 years ago by ▴ 140
0
votes
1
reply
4.9k
views
Comment: Comment: alignment using needleman wunsch in biopython
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 140
1
vote
3
replies
4.9k
views
alignment using needleman wunsch in biopython
alignment
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 140
0
votes
1
reply
3.5k
views
Comment: C: string matching with mismatches
10.0 years ago by sumithrasank75 ▴ 140
3
votes
7
replies
3.5k
views
string matching with mismatches
alignment sequence
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 140
0
votes
1
reply
3.5k
views
Comment: C: string matching with mismatches
10.0 years ago by sumithrasank75 ▴ 140
0
votes
1
reply
2.1k
views
Comment: Comment: filtering reads based on read counts
updated 2.3 years ago by 45k • written 10.1 years ago by ▴ 140
0
votes
1
reply
1.9k
views
microarray datasets for different cell types
microarray
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 140
0
votes
0
replies
27k
views
Comment: Comment: searching reads with a certain sequence in fastq file
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 140
0
votes
2
replies
27k
views
Comment: C: searching reads with a certain sequence in fastq file
10.1 years ago by sumithrasank75 ▴ 140
41 results • Page 1 of 1
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