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Comment: C: Visualize bigwig, bedgraph, wig files on Genome Browser?
7.7 years ago by salamandra ▴ 550
1
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7.0k
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Comment: C: How to get work experience in Bioinformatics
7.7 years ago by salamandra ▴ 550
0
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0
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13k
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Comment: C: Visualize bigwig, bedgraph, wig files on Genome Browser?
7.7 years ago by salamandra ▴ 550
1
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0
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11k
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Comment: C: Visualizing bigwig files in UCSC genome browser
7.7 years ago by salamandra ▴ 550
0
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0
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13k
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Comment: C: Visualize bigwig, bedgraph, wig files on Genome Browser?
7.7 years ago by salamandra ▴ 550
5
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6
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13k
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Visualize bigwig, bedgraph, wig files on Genome Browser?
RNA-Seq ChIP-Seq Genome Browser
updated 7.7 years ago by ★ 2.5k • written 7.7 years ago by ▴ 550
0
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1
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2.4k
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Comment: C: ChIP-seq: When trimming Input samples should we also trim ChIP samples?
7.7 years ago by salamandra ▴ 550
0
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1
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2.4k
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Comment: C: ChIP-seq: When trimming Input samples should we also trim ChIP samples?
7.7 years ago by salamandra ▴ 550
4
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8
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2.4k
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ChIP-seq: When trimming Input samples should we also trim ChIP samples?
ChIP-Seq QC
7.7 years ago by salamandra ▴ 550
0
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0
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2.4k
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Comment: A: ChIP-seq: When trimming Input samples should we also trim ChIP samples?
7.7 years ago by salamandra ▴ 550
0
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1
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2.4k
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Comment: C: ChIP-seq: When trimming Input samples should we also trim ChIP samples?
7.7 years ago by salamandra ▴ 550
3
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4
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3.0k
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ChIP-seq: Should we be consistent with the control used (IgG/Input) among different conditions?
ChIP-Seq Controls
updated 7.7 years ago by 105k • written 7.7 years ago by ▴ 550
0
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1
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3.9k
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Comment: C: Isn't fastq file header suppose to have barcode sequence?
7.7 years ago by salamandra ▴ 550
0
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1
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3.9k
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Comment: C: Isn't fastq file header suppose to have barcode sequence?
7.7 years ago by salamandra ▴ 550
0
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1
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4.5k
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Comment: C: FastQC report: Why no error in 'Adapter content' and which sequences of 'Overrep
7.7 years ago by salamandra ▴ 550
1
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3
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4.5k
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FastQC report: Why no error in 'Adapter content' and which sequences of 'Overrepresented sequences' should trim?
sequencing RNA-Seq ChIP-Seq
7.7 years ago by salamandra ▴ 550
13
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13
replies
9.3k
views
8 follow
TopHat installation error
tophat
updated 4 months ago by • 0 • written 8.5 years ago by ▴ 550
0
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0
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1.6k
views
Transcription factors and closed/activated/repressed chromatin
ChIP-Seq chromatin ATAC-seq
7.9 years ago by salamandra ▴ 550
1
vote
1
reply
1.7k
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ChIP-seq: Why MACS doesn't apply tag shifting to the control sample?
ChIP-Seq
updated 8.0 years ago by ▴ 50 • written 8.0 years ago by ▴ 550
0
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0
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7.2k
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Comment: C: How does MACS algorithm work on ATAC-seq data if there is no control sample and
8.0 years ago by salamandra ▴ 550
0
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0
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4.4k
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Comment: C: MACS for chip-seq: difference between sonication size(bandwidth) and fragment si
8.0 years ago by salamandra ▴ 550
0
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1
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4.4k
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Comment: C: MACS for chip-seq: difference between sonication size(bandwidth) and fragment si
8.0 years ago by salamandra ▴ 550
0
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1
reply
4.4k
views
Comment: C: MACS for chip-seq: difference between sonication size(bandwidth) and fragment si
8.0 years ago by salamandra ▴ 550
7
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6
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4.4k
views
MACS for chip-seq: difference between sonication size(bandwidth) and fragment size?
ChIP-Seq MACS
updated 8.0 years ago by 90k • written 8.0 years ago by ▴ 550
16
votes
5
replies
14k
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Install DESeq2 and edgeR with Anaconda
Anaconda DESeq2 edgeR
updated 8.1 years ago by ▴ 80 • written 8.4 years ago by ▴ 550
1
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2
replies
2.2k
views
list in which each element is a vector of GO BP ids corresponding to an entrez gene
R org.Hs.eg.db lapply
updated 8.2 years ago by 20 • written 8.3 years ago by ▴ 550
2
votes
2
replies
5.4k
views
End coordinate bigger than chromosome size converting bedgraph to bigwig/ Setting macs2 chromosome size
ChIP-Seq
updated 8.2 years ago by ★ 19k • written 8.2 years ago by ▴ 550
0
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0
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2.2k
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Comment: C: list in which each element is a vector of GO BP ids corresponding to an entrez g
8.3 years ago by salamandra ▴ 550
1
vote
1
reply
3.7k
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Comment: C: Boxplot/bargraph for expression data using ggplot2
8.3 years ago by salamandra ▴ 550
0
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0
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1.9k
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GOHyperGParams GOstats R package - categorySubsetIds parameter
p-value Hypergeometric test R GOstats
8.3 years ago by salamandra ▴ 550
0
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1
reply
3.3k
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Enrichment heatmap - GOstats package of R
R GOstats p-value
8.3 years ago by salamandra ▴ 550
1
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1
reply
7.6k
views
Comment: C: ValueError: invalid literal for int() with base 10: 'start' computeMatrix of dee
8.4 years ago by salamandra ▴ 550
0
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1
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7.6k
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Comment: A: ValueError: invalid literal for int() with base 10: 'start' computeMatrix of dee
8.4 years ago by salamandra ▴ 550
0
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1
reply
7.6k
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Comment: C: ValueError: invalid literal for int() with base 10: 'start' computeMatrix of dee
8.4 years ago by salamandra ▴ 550
1
vote
1
reply
1.9k
views
Comment: C: MACS2 bdgpeakcall gives UnboundLocalError: local variable 'peak_content' referen
8.4 years ago by salamandra ▴ 550
2
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2
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1.9k
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MACS2 bdgpeakcall gives UnboundLocalError: local variable 'peak_content' referenced before assignment:
ChIP-Seq MACS2
8.4 years ago by salamandra ▴ 550
0
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0
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1.6k
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Comment: C: all the peaks of MACS2 BED file starting at position 0
8.4 years ago by salamandra ▴ 550
2
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2
replies
1.6k
views
all the peaks of MACS2 BED file starting at position 0
MACS2
8.4 years ago by salamandra ▴ 550
0
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0
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5.7k
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Comment: C: Which peaks in the bed file output by MACS2 are significant ?
8.4 years ago by salamandra ▴ 550
0
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1
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5.7k
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Comment: C: Which peaks in the bed file output by MACS2 are significant ?
8.4 years ago by salamandra ▴ 550
4
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5
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5.7k
views
Which peaks in the bed file output by MACS2 are significant ?
MACS2.0 Homer annotatePeaks.pl
updated 8.4 years ago by 105k • written 8.4 years ago by ▴ 550
4
votes
3
replies
1.9k
views
Retrieve header of column (field) in which data is above or equals a number
Commandline awk
updated 8.5 years ago by 166k • written 8.5 years ago by ▴ 550
0
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1
reply
9.3k
views
Comment: C: TopHat installation error
8.5 years ago by salamandra ▴ 550
0
votes
1
reply
9.3k
views
Comment: C: TopHat installation error
8.5 years ago by salamandra ▴ 550
0
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0
replies
43k
views
Comment: C: Export graph in R - error QuartzBitmap_Output - unable to open file
8.6 years ago by salamandra ▴ 550
0
votes
1
reply
43k
views
Comment: C: Export graph in R - error QuartzBitmap_Output - unable to open file
8.6 years ago by salamandra ▴ 550
0
votes
1
reply
43k
views
Comment: C: Export graph in R - error QuartzBitmap_Output - unable to open file
8.6 years ago by salamandra ▴ 550
2
votes
6
replies
43k
views
Export graph in R - error QuartzBitmap_Output - unable to open file
R
8.6 years ago by salamandra ▴ 550
2
votes
2
replies
2.0k
views
Can't open help page R studio with hit tab when start writing the name of a function + F1
R RStudio
updated 8.6 years ago by 12k • written 8.6 years ago by ▴ 550
0
votes
0
replies
6.5k
views
Comment: C: Chip-seq - fastqc: zip file doesn't open
8.6 years ago by salamandra ▴ 550
211 results • Page 4 of 5
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