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5
votes
4
replies
2.9k
views
How to call mitochondrial SNP?
SNP mitochondrial
updated 18 months ago by 45k • written 8.4 years ago by ▴ 100
0
votes
0
replies
17k
views
Comment: C: Questions about DAVID
updated 5.7 years ago by 45k • written 9.7 years ago by ▴ 100
0
votes
1
reply
3.2k
views
Question about PCA plot using RPKM/FPKM.
PCA RNA-Seq FPKM
updated 6.1 years ago by 20 • written 6.9 years ago by ▴ 100
0
votes
1
reply
3.0k
views
Comment: C: Variant calling on single sample Macaque WGS data - advice please
6.6 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.5k
views
Comment: C: What's the difference of FPKM generated by htseq and stringtie?
6.8 years ago by hxlei613 ▴ 100
2
votes
4
replies
2.5k
views
What's the difference of FPKM generated by htseq and stringtie?
fpkm stringtie htseq
updated 10 weeks ago by • 0 • written 6.8 years ago by ▴ 100
0
votes
6
replies
4.2k
views
FastQC report about WGBS.
WGBS Trimming
updated 6.9 years ago by 20 • written 9.1 years ago by ▴ 100
0
votes
1
reply
1.3k
views
how to detect association between SNP and expression?
SNP expression association
updated 6.9 years ago by ▴ 110 • written 6.9 years ago by ▴ 100
0
votes
1
reply
1.7k
views
Are there needs to perform imputation for genotype generated from WGS ?
imputation WGS
updated 7.3 years ago by ★ 2.1k • written 7.3 years ago by ▴ 100
1
vote
3
replies
3.3k
views
How does edgeR normalize sequencing depth
R
updated 3.1 years ago by 45k • written 9.8 years ago by ▴ 100
10
votes
5
replies
17k
views
Questions about DAVID
DAVID
updated 3.1 years ago by 45k • written 9.7 years ago by ▴ 100
2
votes
1
reply
2.0k
views
How to infer allele specific expression gene without phasing information?
allele specific expression
8.0 years ago by hxlei613 ▴ 100
1
vote
2
replies
11k
views
ensembl transcript id to gene symbol using biomart
R biomart EnsEMBL
updated 8.1 years ago by 24k • written 8.1 years ago by ▴ 100
0
votes
1
reply
2.9k
views
Question about details of the calculation of bisulfite conversion rates.
bisulfite conversion rates
updated 8.3 years ago by 105k • written 8.3 years ago by ▴ 100
0
votes
0
replies
3.1k
views
Comment: C: Bias plot from targeted bisulfite sequencing
8.4 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.7k
views
Comment: C: CpG coverage of BS-seq ?
8.5 years ago by hxlei613 ▴ 100
0
votes
3
replies
2.7k
views
CpG coverage of BS-seq ?
bs-seq
8.5 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.0k
views
DMAP for RRBS generate blank output
DMAP RRBS
updated 3.7 years ago by ▴ 130 • written 8.6 years ago by ▴ 100
5
votes
3
replies
3.6k
views
Possible bug for bismark when methylation calling ?
bismark methylation bs-seq
updated 8.8 years ago by 5.8k • written 8.9 years ago by ▴ 100
1
vote
5
replies
3.1k
views
Filter a sam file by alignment score.
bwa alignment score
updated 8.9 years ago by 20 • written 9.0 years ago by ▴ 100
0
votes
0
replies
3.1k
views
Comment: C: Filter a sam file by alignment score.
9.0 years ago by hxlei613 ▴ 100
0
votes
0
replies
3.1k
views
Comment: C: Filter a sam file by alignment score.
9.0 years ago by hxlei613 ▴ 100
0
votes
1
reply
3.1k
views
Comment: C: Where is the alignment score using bwa-sampe ?
9.0 years ago by hxlei613 ▴ 100
0
votes
0
replies
37k
views
Comment: C: Samtools View: Only Forward Or Reverse Strand
9.0 years ago by hxlei613 ▴ 100
2
votes
1
reply
6.5k
views
What's the difference between Trim galore and Cutadapt when it comes to quality trimming ?
Trim galore Cutadapt
updated 9.0 years ago by 89k • written 9.1 years ago by ▴ 100
0
votes
0
replies
2.8k
views
Answer: A: Bwa-0.6.1-Tpx.Patch
9.0 years ago by hxlei613 ▴ 100
0
votes
0
replies
2.7k
views
Answer: A: Bwa Error Using Bwa-0.6.1-Tpx.Patch
9.0 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.1k
views
Comment: C: Are there any tools able to exclude specific bases (bias) from methylation calli
9.0 years ago by hxlei613 ▴ 100
0
votes
0
replies
2.1k
views
Comment: C: Are there any tools able to exclude specific bases (bias) from methylation calli
9.0 years ago by hxlei613 ▴ 100
0
votes
5
replies
2.1k
views
Are there any tools able to exclude specific bases (bias) from methylation calling ?
methylation calling
updated 9.0 years ago by 13k • written 9.0 years ago by ▴ 100
0
votes
1
reply
3.0k
views
Comment: C: auto trimming of adapter and 6 base normalizing sequence from miRNA reads
9.0 years ago by hxlei613 ▴ 100
0
votes
0
replies
4.2k
views
Comment: C: FastQC report about WGBS.
9.1 years ago by hxlei613 ▴ 100
0
votes
1
reply
4.2k
views
Comment: C: FastQC report about WGBS.
9.1 years ago by hxlei613 ▴ 100
0
votes
2
replies
4.2k
views
Comment: C: Questions about WGBS trimming
9.1 years ago by hxlei613 ▴ 100
1
vote
3
replies
3.7k
views
Why is sliding window applied to CpG methylation level calculation ?
methylation
updated 9.1 years ago by ★ 4.0k • written 9.1 years ago by ▴ 100
0
votes
0
replies
2.0k
views
Samtools mpileup output miss some bases.
Samtools mpileup
9.1 years ago by hxlei613 ▴ 100
0
votes
0
replies
15k
views
Comment: C: Calculating the bisulfite conversion rate
9.2 years ago by hxlei613 ▴ 100
0
votes
1
reply
5.3k
views
Comment: C: Question about RRBS mapping efficiency
9.2 years ago by hxlei613 ▴ 100
0
votes
1
reply
5.3k
views
Comment: C: Question about RRBS mapping efficiency
9.2 years ago by hxlei613 ▴ 100
5
votes
6
replies
5.3k
views
Question about RRBS mapping efficiency
RRBS mapping efficiency
updated 9.2 years ago by 105k • written 9.2 years ago by ▴ 100
0
votes
0
replies
2.2k
views
Question about Breakdancer output
breakdancer
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 100
2
votes
4
replies
4.2k
views
Questions about BreakDancer
Breakdancer NGS CNV
updated 3.1 years ago by 45k • written 9.7 years ago by ▴ 100
0
votes
0
replies
4.2k
views
Comment: C: Questions about BreakDancer
9.7 years ago by hxlei613 ▴ 100
0
votes
1
reply
3.3k
views
Comment: C: How does edgeR normalize sequencing depth
9.7 years ago by hxlei613 ▴ 100
3
votes
0
replies
2.7k
views
Question about MEDIPS
methylation medips r dmr
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 100
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