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5
votes
4
replies
2.3k
views
How to call mitochondrial SNP?
SNP mitochondrial
updated 7 weeks ago by 43k • written 7.0 years ago by ▴ 100
0
votes
0
replies
15k
views
Comment: C: Questions about DAVID
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 100
0
votes
1
reply
2.7k
views
Question about PCA plot using RPKM/FPKM.
PCA RNA-Seq FPKM
updated 4.7 years ago by 20 • written 5.5 years ago by ▴ 100
0
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1
reply
2.2k
views
Comment: C: Variant calling on single sample Macaque WGS data - advice please
5.2 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.0k
views
Comment: C: What's the difference of FPKM generated by htseq and stringtie?
5.4 years ago by hxlei613 ▴ 100
2
votes
3
replies
2.0k
views
What's the difference of FPKM generated by htseq and stringtie?
fpkm stringtie htseq
updated 5.4 years ago by 104k • written 5.4 years ago by ▴ 100
0
votes
6
replies
3.5k
views
FastQC report about WGBS.
WGBS Trimming
updated 5.5 years ago by 20 • written 7.7 years ago by ▴ 100
0
votes
1
reply
1.0k
views
how to detect association between SNP and expression?
SNP expression association
updated 5.5 years ago by ▴ 110 • written 5.5 years ago by ▴ 100
0
votes
1
reply
1.5k
views
Are there needs to perform imputation for genotype generated from WGS ?
imputation WGS
updated 5.9 years ago by ★ 1.7k • written 5.9 years ago by ▴ 100
1
vote
3
replies
2.8k
views
How does edgeR normalize sequencing depth
R
updated 20 months ago by 43k • written 8.4 years ago by ▴ 100
10
votes
5
replies
15k
views
Questions about DAVID
DAVID
updated 21 months ago by 43k • written 8.3 years ago by ▴ 100
2
votes
1
reply
1.7k
views
How to infer allele specific expression gene without phasing information?
allele specific expression
6.6 years ago by hxlei613 ▴ 100
1
vote
2
replies
10k
views
ensembl transcript id to gene symbol using biomart
R biomart EnsEMBL
updated 6.7 years ago by 23k • written 6.7 years ago by ▴ 100
0
votes
1
reply
2.5k
views
Question about details of the calculation of bisulfite conversion rates.
bisulfite conversion rates
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: Bias plot from targeted bisulfite sequencing
7.0 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.2k
views
Comment: C: CpG coverage of BS-seq ?
7.1 years ago by hxlei613 ▴ 100
0
votes
3
replies
2.2k
views
CpG coverage of BS-seq ?
bs-seq
7.1 years ago by hxlei613 ▴ 100
0
votes
1
reply
1.7k
views
DMAP for RRBS generate blank output
DMAP RRBS
updated 2.3 years ago by ▴ 130 • written 7.2 years ago by ▴ 100
5
votes
3
replies
3.0k
views
Possible bug for bismark when methylation calling ?
bismark methylation bs-seq
updated 7.4 years ago by 5.7k • written 7.5 years ago by ▴ 100
1
vote
5
replies
2.6k
views
Filter a sam file by alignment score.
bwa alignment score
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: Filter a sam file by alignment score.
7.6 years ago by hxlei613 ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: Filter a sam file by alignment score.
7.6 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.6k
views
Comment: C: Where is the alignment score using bwa-sampe ?
7.6 years ago by hxlei613 ▴ 100
0
votes
0
replies
34k
views
Comment: C: Samtools View: Only Forward Or Reverse Strand
7.6 years ago by hxlei613 ▴ 100
2
votes
1
reply
5.8k
views
What's the difference between Trim galore and Cutadapt when it comes to quality trimming ?
Trim galore Cutadapt
updated 7.6 years ago by 81k • written 7.7 years ago by ▴ 100
0
votes
0
replies
2.5k
views
Answer: A: Bwa-0.6.1-Tpx.Patch
7.6 years ago by hxlei613 ▴ 100
0
votes
0
replies
2.3k
views
Answer: A: Bwa Error Using Bwa-0.6.1-Tpx.Patch
7.6 years ago by hxlei613 ▴ 100
0
votes
1
reply
1.7k
views
Comment: C: Are there any tools able to exclude specific bases (bias) from methylation calli
7.6 years ago by hxlei613 ▴ 100
0
votes
0
replies
1.7k
views
Comment: C: Are there any tools able to exclude specific bases (bias) from methylation calli
7.6 years ago by hxlei613 ▴ 100
0
votes
5
replies
1.7k
views
Are there any tools able to exclude specific bases (bias) from methylation calling ?
methylation calling
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 100
0
votes
1
reply
2.5k
views
Comment: C: auto trimming of adapter and 6 base normalizing sequence from miRNA reads
7.7 years ago by hxlei613 ▴ 100
0
votes
0
replies
3.5k
views
Comment: C: FastQC report about WGBS.
7.7 years ago by hxlei613 ▴ 100
0
votes
1
reply
3.5k
views
Comment: C: FastQC report about WGBS.
7.7 years ago by hxlei613 ▴ 100
0
votes
2
replies
3.5k
views
Comment: C: Questions about WGBS trimming
7.7 years ago by hxlei613 ▴ 100
1
vote
3
replies
3.2k
views
Why is sliding window applied to CpG methylation level calculation ?
methylation
updated 7.7 years ago by ★ 4.0k • written 7.7 years ago by ▴ 100
0
votes
0
replies
1.8k
views
Samtools mpileup output miss some bases.
Samtools mpileup
7.7 years ago by hxlei613 ▴ 100
0
votes
0
replies
13k
views
Comment: C: Calculating the bisulfite conversion rate
7.8 years ago by hxlei613 ▴ 100
0
votes
1
reply
4.4k
views
Comment: C: Question about RRBS mapping efficiency
7.8 years ago by hxlei613 ▴ 100
0
votes
1
reply
4.4k
views
Comment: C: Question about RRBS mapping efficiency
7.8 years ago by hxlei613 ▴ 100
5
votes
6
replies
4.4k
views
Question about RRBS mapping efficiency
RRBS mapping efficiency
updated 7.8 years ago by 104k • written 7.8 years ago by ▴ 100
0
votes
0
replies
2.0k
views
Question about Breakdancer output
breakdancer
updated 23 months ago by 43k • written 8.3 years ago by ▴ 100
2
votes
4
replies
3.5k
views
Questions about BreakDancer
Breakdancer NGS CNV
updated 21 months ago by 43k • written 8.3 years ago by ▴ 100
0
votes
0
replies
3.5k
views
Comment: C: Questions about BreakDancer
8.3 years ago by hxlei613 ▴ 100
0
votes
1
reply
2.8k
views
Comment: C: How does edgeR normalize sequencing depth
8.3 years ago by hxlei613 ▴ 100
3
votes
0
replies
2.4k
views
Question about MEDIPS
methylation medips r dmr
updated 20 months ago by 43k • written 8.5 years ago by ▴ 100
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