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94
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ChIP-Seq with one poor replicate, one good
chip-seq
updated 2 hours ago by 6.1k • written 17 hours ago by ▴ 110
1
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1
reply
1.2k
views
Answer: Answer: Write maf file (opposite of read.maf)
10 months ago by graeme.thorn ▴ 110
0
votes
1
reply
821
views
Post-imputation QC for input into GWAS analyses
gwas prs
updated 18 months ago by 4.8k • written 18 months ago by ▴ 110
1
vote
3
replies
1.4k
views
No valid chromosomes found! on Michigan Imputation Server
michigan-imputation-server
updated 2.0 years ago by ★ 3.1k • written 2.1 years ago by ▴ 110
1
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0
replies
1.4k
views
Answer: Answer: No valid chromosomes found! on Michigan Imputation Server
2.0 years ago by graeme.thorn ▴ 110
0
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0
replies
1.4k
views
Comment: Comment: No valid chromosomes found! on Michigan Imputation Server
2.1 years ago by graeme.thorn ▴ 110
0
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0
replies
1.3k
views
Comment: Comment: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
2.1 years ago by graeme.thorn ▴ 110
4
votes
2
replies
1.3k
views
Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
imputation
2.1 years ago by graeme.thorn ▴ 110
0
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1
reply
2.1k
views
Comment: Comment: Michigan Imputation Server low reference overlap
2.2 years ago by graeme.thorn ▴ 110
0
votes
3
replies
2.1k
views
Michigan Imputation Server low reference overlap
imputation michigan
updated 2.2 years ago by ★ 3.1k • written 2.2 years ago by ▴ 110
0
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0
replies
1.2k
views
Comment: Comment: Skewed qq plot from logistic regression
2.3 years ago by graeme.thorn ▴ 110
0
votes
2
replies
1.2k
views
Skewed qq plot from logistic regression
R glm qqplot
2.3 years ago by graeme.thorn ▴ 110
1
vote
0
replies
1.9k
views
Comment: Comment: write output files with default name
2.4 years ago by graeme.thorn ▴ 110
1
vote
1
reply
912
views
Normalise tab-delimited format to annovar input
annovar
3.0 years ago by graeme.thorn ▴ 110
1
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0
replies
912
views
Answer: Answer: Normalise tab-delimited format to annovar input
3.0 years ago by graeme.thorn ▴ 110
0
votes
2
replies
1.7k
views
Easy comparison between Whippet, SplAdder and DExSeq differential splicing analyses
SplAdder DExSeq splicing Whippet
updated 3.3 years ago by ▴ 20 • written 4.0 years ago by ▴ 110
0
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1
reply
2.4k
views
Comment: Comment: Hard filtering on GATK HaplotypeCaller giving multiple warnings
3.6 years ago by graeme.thorn ▴ 110
0
votes
3
replies
2.4k
views
Hard filtering on GATK HaplotypeCaller giving multiple warnings
haplotypecaller gatk warnings
updated 3.5 years ago by ▴ 840 • written 3.6 years ago by ▴ 110
0
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0
replies
2.4k
views
Answer: Answer: Hard filtering on GATK HaplotypeCaller giving multiple warnings
3.6 years ago by graeme.thorn ▴ 110
0
votes
0
replies
555
views
Systematic detection of transcript usage from Whippet results
whippet
3.8 years ago by graeme.thorn ▴ 110
1
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4
replies
1.9k
views
Extracting ENST ids from coordinates
biomart whippet
3.9 years ago by graeme.thorn ▴ 110
1
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0
replies
1.9k
views
Answer: Answer: Extracting ENST ids from coordinates
3.9 years ago by graeme.thorn ▴ 110
0
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1
reply
1.9k
views
Comment: Comment: Extracting ENST ids from coordinates
3.9 years ago by graeme.thorn ▴ 110
0
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0
replies
1.7k
views
Comment: Comment: Easy comparison between Whippet, SplAdder and DExSeq differential splicing analy
4.0 years ago by graeme.thorn ▴ 110
0
votes
2
replies
1.1k
views
Prevent DEXSeq breaking transcripts entry when outputting to file
R DExSeq
updated 4.1 years ago by 45k • written 4.1 years ago by ▴ 110
0
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1
reply
2.2k
views
Comment: Comment: Intersecting compressed gVCF with bed file
4.2 years ago by graeme.thorn ▴ 110
2
votes
3
replies
2.2k
views
Intersecting compressed gVCF with bed file
bedtools gVCF intersect
updated 4.2 years ago by 166k • written 4.2 years ago by ▴ 110
0
votes
1
reply
2.1k
views
Comment: Comment: Consensus deduplication issues with non-matching/'slippy' primers?
4.5 years ago by graeme.thorn ▴ 110
0
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1
reply
2.1k
views
Comment: Comment: Consensus deduplication issues with non-matching/'slippy' primers?
4.5 years ago by graeme.thorn ▴ 110
0
votes
5
replies
2.1k
views
Consensus deduplication issues with non-matching/'slippy' primers?
DNA-seq deduplication
updated 4.5 years ago by 22k • written 4.5 years ago by ▴ 110
0
votes
0
replies
1.1k
views
How to interpret output of SAM/SAMseq in R (samr package)
R
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 110
1
vote
2
replies
1.4k
views
Variant data from covid-19 patients
covid-19 vcf
updated 4.8 years ago by 24k • written 5.5 years ago by ▴ 110
0
votes
0
replies
1.3k
views
MSigDB gmt files with Ensembl ID identifiers
msigdb
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 110
0
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1
reply
2.2k
views
Comment: C: Mutation calling directly from FASTQ files
5.0 years ago by graeme.thorn ▴ 110
2
votes
4
replies
2.2k
views
Mutation calling directly from FASTQ files
DNA-Seq variant calling
updated 5.0 years ago by 48k • written 5.0 years ago by ▴ 110
1
vote
1
reply
1.4k
views
PCA on exon count data
RNA-Seq R splicing
5.1 years ago by graeme.thorn ▴ 110
8
votes
7
replies
15k
views
Downloading hg38 centromere and telomere positions from UCSC table browser
ucsc R genome
updated 3.9 years ago by 11k • written 5.5 years ago by ▴ 110
0
votes
3
replies
1.3k
views
Fixing genotypes from split vcf
vcf
5.4 years ago by graeme.thorn ▴ 110
0
votes
0
replies
2.2k
views
Comment: C: GATK VariantFiltration multiple filters including genotype for multi-sample VCF
5.4 years ago by graeme.thorn ▴ 110
0
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0
replies
2.2k
views
Answer: A: GATK VariantFiltration multiple filters including genotype for multi-sample VCF
5.4 years ago by graeme.thorn ▴ 110
0
votes
3
replies
2.2k
views
GATK VariantFiltration multiple filters including genotype for multi-sample VCF
vcf gatk
5.4 years ago by graeme.thorn ▴ 110
0
votes
0
replies
1.9k
views
Comment: C: RNAseq and PAM50 prediction
5.5 years ago by graeme.thorn ▴ 110
0
votes
2
replies
1.9k
views
RNAseq and PAM50 prediction
RNA-Seq R genefu
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 110
0
votes
0
replies
15k
views
Comment: C: Downloading hg38 centromere and telomere positions from UCSC table browser
5.5 years ago by graeme.thorn ▴ 110
1
vote
1
reply
1.2k
views
Extracting variant reads and reference reads quickly from mapped files
dna-seq variant
5.6 years ago by graeme.thorn ▴ 110
0
votes
0
replies
1.1k
views
Add signatures (trinucleotide context) to vcf file
variants
5.8 years ago by graeme.thorn ▴ 110
3
votes
1
reply
3.0k
views
ctDNA WES duplication rates from NovaSeq 6000 and HiSeq 4000
wes sequencing illumina novaseq
5.9 years ago by graeme.thorn ▴ 110
1
vote
0
replies
1.3k
views
Answer: A: Generating a PoN with GATK CombineVariants using wildcards
6.1 years ago by graeme.thorn ▴ 110
1
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1
reply
1.3k
views
Generating a PoN with GATK CombineVariants using wildcards
vcf gatk
6.1 years ago by graeme.thorn ▴ 110
0
votes
0
replies
4.6k
views
Comment: C: Understanding columns of ChIP-Seq BED file format
6.2 years ago by graeme.thorn ▴ 110
88 results • Page 1 of 2
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