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Showing :
questions
3
votes
4
replies
427
views
Uploading HiC track on UCSC browser
custom_track
UCSC
HiC
10 weeks ago by
arsala521
▴ 30
0
votes
0
replies
188
views
Loop and TAD calling from HiC reads using HOMER
HiC
HOMER
updated 4 months ago by
Ram
43k • written 4 months ago by
arsala521
▴ 30
3
votes
4
replies
818
views
Getting gene counts from transcript counts using R package 'tximport'
tximport
RNA-seq
updated 5 months ago by
Ram
43k • written 5 months ago by
arsala521
▴ 30
3
votes
1
reply
409
views
Data for non-human primates
APPRIS
UCSC
GENCODE
Non-human-primates
updated 6 months ago by
GenoMax
142k • written 6 months ago by
arsala521
▴ 30
2
votes
2
replies
547
views
Ensembl transcript IDs
Ensembl
transcript
IDs
written 6 months ago by
arsala521
▴ 30
1
vote
1
reply
421
views
Getting differentially expressed transcripts among primates from RNA-seq data
differential-gene-expression
RNA-seq-data-analysis
updated 6 months ago by
dthorbur
★ 2.0k • written 6 months ago by
arsala521
▴ 30
5
votes
5
replies
1.2k
views
Genes' fpkm values through cufflink
Cufflink
RNA-seq
fpkm
11 months ago by
arsala521
▴ 30
3
votes
5
replies
899
views
Centromere and telomere positions for Chm13v2 assembly
centromere
chm13v2
updated 9 months ago by
jleehan
▴ 120 • written 13 months ago by
arsala521
▴ 30
1
vote
1
reply
688
views
Subtracting bed file from whole genome
bed
updated 21 months ago by
ATpoint
82k • written 21 months ago by
arsala521
▴ 30
0
votes
0
replies
472
views
Hi-C data analysis (Loop and domain calling)
calling
and
Hi-C
HOMER
domain
Loop
23 months ago by
arsala521
▴ 30
0
votes
0
replies
291
views
Getting length of total region aligned to cluster of paired end reads
paired-reads
alignment
23 months ago by
arsala521
▴ 30
0
votes
0
replies
294
views
Access results from previous version of PANTHER/GO database
ontology
Gene
PANTHER
2.1 years ago by
arsala521
▴ 30
2
votes
10
replies
2.9k
views
Getting peak heights from TF chIP-seq data (wig file)
ChIP-seq
updated 9 months ago by
Ram
43k • written 2.4 years ago by
arsala521
▴ 30
8
votes
8
replies
3.0k
views
TSS of protein coding genes
TSS
protein coding genes
ucsc
updated 14 months ago by
ConvolutedGenome
▴ 30 • written 3.7 years ago by
arsala521
▴ 30
1
vote
1
reply
597
views
Graphical map of TFBSs
Genome
Jbrowse
browser
updated 2.6 years ago by
cmdcolin
★ 3.8k • written 2.6 years ago by
arsala521
▴ 30
0
votes
0
replies
643
views
BEDPE file for ENCODE 3D chromatin structure data
BEDPE
2.8 years ago by
arsala521
▴ 30
0
votes
2
replies
1.2k
views
Output from macs subcommand 'bdgpeakcall'
Output
macs
header
2.8 years ago by
arsala521
▴ 30
1
vote
2
replies
1.3k
views
Getting peak (bed narrowPeak) from signals (Wig)
data
ChIP-seq
analysis
2.9 years ago by
arsala521
▴ 30
0
votes
3
replies
1.3k
views
Synonymous and asynonymous sites in Ka/Ks
Ka
Ks
updated 3.1 years ago by
Istvan Albert
100k • written 3.1 years ago by
arsala521
▴ 30
0
votes
0
replies
546
views
Identification of paralogs having parental/daughter relationship
paralogs
3.1 years ago by
arsala521
▴ 30
2
votes
4
replies
851
views
Gene annotations of mammalian genomes
Gene annotation
mammalian genomes
3.2 years ago by
arsala521
▴ 30
0
votes
9
replies
907
views
Getting human-specific regions of the human genome
human-specific regions
updated 3.4 years ago by
Alex Reynolds
35k • written 3.4 years ago by
arsala521
▴ 30
5
votes
7
replies
2.3k
views
TSS of canonical transcripts
TSS
canonical transcripts
updated 3.7 years ago by
ATpoint
82k • written 3.7 years ago by
arsala521
▴ 30
0
votes
1
reply
719
views
Observing merged genomic intervals along with their original unmerged intervals
bedtools
merging
updated 4.2 years ago by
Kevin Blighe
88k • written 4.2 years ago by
arsala521
▴ 30
6
votes
2
replies
2.9k
views
Counting the number of values within a range in a specific column
awk
updated 4.3 years ago by
zx8754
11k • written 4.3 years ago by
arsala521
▴ 30
2
votes
2
replies
2.2k
views
Getting length of every interval in a bed file
bed
updated 14 months ago by
Ram
43k • written 4.3 years ago by
arsala521
▴ 30
1
vote
1
reply
726
views
Matching genomic intervals in two bed files
shell scripting
matching column between two files
4.3 years ago by
arsala521
▴ 30
0
votes
0
replies
2.3k
views
Converting TCGA MAF files to VCF using reference assembly GRCh37 lite
Assembly
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
arsala521
▴ 30
0
votes
4
replies
4.4k
views
Filter variants in vcf file according to genotype of particular samples?
variant filtration
genotype
updated 6.1 years ago by
finswimmer
16k • written 6.1 years ago by
arsala521
▴ 30
0
votes
0
replies
1.5k
views
Error in using ParsSNP
ParsSNP
7.6 years ago by
arsala521
▴ 30
0
votes
0
replies
1.5k
views
Construcing VRanges from VCF files
VRanges
7.9 years ago by
arsala521
▴ 30
0
votes
0
replies
1.9k
views
Error in running oncotator
oncotator
software error
8.1 years ago by
arsala521
▴ 30
0
votes
0
replies
2.6k
views
Converting TCGA MAF files to VCF
Assembly
genome
updated 22 months ago by
Ram
43k • written 8.2 years ago by
arsala521
▴ 30
33 results • Page
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