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1.0k
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Reactome physical association pairs in the human protein-protein interactions data
reactome network ppi
updated 4.4 years ago by 27k • written 4.4 years ago by ▴ 100
3
votes
1
reply
4.3k
views
RNA-Seq data distribution
RNA-Seq distribution
updated 5.7 years ago by 20 • written 9.0 years ago by ▴ 100
1
vote
2
replies
1.2k
views
Diseased tissue gene expression source
gene disease expression
updated 6.3 years ago by ★ 5.2k • written 6.3 years ago by ▴ 100
6
votes
6
replies
9.6k
views
Using ComBat on RNASeq FPKM counts
RNA-Seq ComBat
updated 7.1 years ago by 89k • written 8.9 years ago by ▴ 100
0
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0
replies
1.0k
views
Genes that affect cancer prognosis in general
cancer survival gene
7.5 years ago by ebrudermanver ▴ 100
0
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0
replies
9.8k
views
Comment: C: Difference between DNA microarray and RNA microarray
7.8 years ago by ebrudermanver ▴ 100
7
votes
7
replies
9.8k
views
Difference between DNA microarray and RNA microarray
sequencing gene
updated 7.8 years ago by ▴ 290 • written 7.8 years ago by ▴ 100
0
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1
reply
9.8k
views
Comment: C: Difference between DNA microarray and RNA microarray
7.8 years ago by ebrudermanver ▴ 100
0
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1
reply
3.5k
views
Comment: C: Calculating FPKM values from HT-counts
7.9 years ago by ebrudermanver ▴ 100
0
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1
reply
2.9k
views
Comment: C: What does it mean to model expression data by a probability distribution?
8.1 years ago by ebrudermanver ▴ 100
5
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3
replies
2.9k
views
What does it mean to model expression data by a probability distribution?
RNA-Seq distribution microarray
updated 8.1 years ago by 27k • written 8.1 years ago by ▴ 100
6
votes
3
replies
4.0k
views
What is the reason why we usually use normalized values from RNA-Seq (FPKM, RPKM, etc.) ?
RNA-Seq
updated 8.1 years ago by 56k • written 8.1 years ago by ▴ 100
0
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0
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4.0k
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Answer: A: What is the reason why we usually use normalized values from RNA-Seq (FPKM, RPKM
8.1 years ago by ebrudermanver ▴ 100
4
votes
2
replies
3.6k
views
What is the point of standardizing each gene in gene expression data?
standardization gene-expression
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 100
4
votes
2
replies
2.4k
views
Why some of the gene peptides returned by biomaRt do not have an asterisk in the end?
peptide biomart
updated 8.1 years ago by 24k • written 8.1 years ago by ▴ 100
1
vote
4
replies
3.0k
views
Is it fair to compare the significance of overlap of 2 different sized gene sets with a third gene set using Fisher's exact test?
statistics
updated 8.1 years ago by 11k • written 8.1 years ago by ▴ 100
2
votes
1
reply
1.6k
views
Do Ensembl gene IDs always correspond to human genes?
ensembl
updated 8.8 years ago by ★ 2.1k • written 8.8 years ago by ▴ 100
0
votes
2
replies
3.0k
views
Using PLINK to check SNP variation for a gene
SNP
updated 8.9 years ago by 20 • written 9.0 years ago by ▴ 100
0
votes
1
reply
9.6k
views
Comment: C: Using ComBat on RNASeq FPKM counts
8.9 years ago by ebrudermanver ▴ 100
0
votes
1
reply
9.7k
views
Comment: C: RNA-seq vs. Microarray
9.0 years ago by ebrudermanver ▴ 100
0
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0
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3.8k
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Comment: C: PLINK linear association
9.0 years ago by ebrudermanver ▴ 100
2
votes
2
replies
3.8k
views
PLINK linear association
SNP multiple-regression
updated 9.0 years ago by 11k • written 9.0 years ago by ▴ 100
0
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0
replies
1.8k
views
Comment: C: PLINK error: "Could not place marker for left window edge"
9.0 years ago by ebrudermanver ▴ 100
0
votes
2
replies
1.8k
views
PLINK error: "Could not place marker for left window edge"
SNP
9.0 years ago by ebrudermanver ▴ 100
1
vote
0
replies
1.7k
views
Is it okay to scale the RNA-Seq counts after log-transformation?
RNA-Seq
9.2 years ago by ebrudermanver ▴ 100
0
votes
1
reply
2.1k
views
Comment: C: Genes that exist in old Affymetrix platform but not in the newer one
9.5 years ago by ebrudermanver ▴ 100
3
votes
4
replies
2.1k
views
Genes that exist in old Affymetrix platform but not in the newer one
sequencing Affymetrix
updated 9.5 years ago by ★ 2.1k • written 9.5 years ago by ▴ 100
2
votes
1
reply
1.8k
views
REACTOME pathways origin
REACTOME pathway
updated 9.6 years ago by 27k • written 9.6 years ago by ▴ 100
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